SignalP pipeline

SignalP specifications

Information


Unique identifier OMICS_03894
Name SignalP
Alternative name SignalP-NN
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Animals
  • Eubacteria
  • Fungi
  • Plants
  • Protists

Documentation


Maintainer


  • person_outline Henrik Nielsen <>

Additional information


Access available upon request.

Information


Unique identifier OMICS_03894
Name SignalP
Alternative name SignalP-NN
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A single amino acid sequence or several sequences.
Input format FASTA
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Advanced
Version 4.1
Stability Stable
Requirements CYGWIN or MobaXterm (Windows only), GNUPLOT

Taxon


  • Animals
  • Eubacteria
  • Fungi
  • Plants
  • Protists

Download


Versioning


Add your version

Documentation


Maintainer


This tool is not maintained anymore.

Additional information


Access available upon request.

Publications for SignalP

SignalP citations

 (90)
2018
PMCID: 5960286

[…] the orf prediction was performed on the softberry website. the smart program (smart.embl-heidelberg.de/) was used for the identification of modular domains. the signal peptide prediction program signalp 4.1 server (www.cbs.dtu.dk/services/signalp/) was used to predict n-terminal signal peptides. the multiple sequence alignment of the cplcp family proteins was carried out by using clustalx […]

2018
PMCID: 5838922

[…] was used to search for all possible orfs, considering atg as potential start codon. web servers for signalp v4.0 (petersen et al., 2011) (http://www.cbs.dtu.dk/services/signalp/) and tmhmm (krogh et al., 2001) (http://www.cbs.dtu.dk/services/tmhmm/) were used to examine each orfs for the presence of a signal peptide and transmembrane helices. primer designs, […]

2018
PMCID: 5805349

[…] (xp_003041184), aspergillus terreus (xp_001217367) and aspergillus nidulans (xp_682503) were compared. in addition, the putative khs sequence from n. haematococca was subjected to analysis with signalp to predict the presence and location of a supposed signal peptide and its cleavage site, respectively., p. pastoris main cultures were grown in 25 ml of bmgy, inoculated to a final od600 […]

2017
PMCID: 5751084

[…] similar properties (scoring >0.5 in the gonnet pam 250 matrix), and a period (∙) indicates conservation among groups of weakly similar properties (scoring ≤0.5 in the gonnet pam 250 matrix). the signalp 4.1 server (petersen et al. 2011) predicted the presence and location of signal peptide cleavage sites in the ae. aegypti ferritin light chain amino acid sequences. the theoretical mw […]

2017
PMCID: 5741679

[…] catalytic residues were predicted by searching the ncbi conserved domain database (http://www.ncbi.nlm.nih.gov/structure/cdd/cdd.shtml). putative n-terminal signal peptides were predicted using the signalp 4.0 program (http://www.cbs.dtu.dk/services/signalp/) (brunak et al., 2010)., the amino acid sequences of eoblcxes and cxes from other species were aligned using clustalx 2.0 (larkin et al., […]

SignalP institution(s)
Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark; Novo Nordisk Foundation Center for Protein Research, Health Sciences Faculty, University of Copenhagen, Copenhagen, Denmark; Center for Biomembrane Research, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden; Science for Life Laboratory, Stockholm University, Solna, Sweden

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