Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Signature detection software tools | Comparative genomics

A signature is defined as a sequence that is capable of discriminating a group of sequences of interest from a background group of sequences. Signatures may reside in genic or intergenic regions and may correspond to genomic islands, phage regions…
CGUG
Web

CGUG CoreGenesUniqueGenes

Performs iterative BLASTP analyses employing a reference genome and up to four…

Performs iterative BLASTP analyses employing a reference genome and up to four query genomes to provide a table of genes common to these genomes. The CGUG web app can be used for re-annotating small…

CoreGenes
Web

CoreGenes

Determines the core set of genes in a group of small genomes. CoreGenes is a…

Determines the core set of genes in a group of small genomes. CoreGenes is a global JAVA-based interactive data mining tool which allows for the identification, characterization, catalog and…

mGenomeSubtract…
Web

mGenomeSubtractor

Allows parallel genome-scale in silico ‘subtractive hybridization’ analyses…

Allows parallel genome-scale in silico ‘subtractive hybridization’ analyses of reference genomes. mGenomeSubtractor can compare a reference genome and a set of subject genomes from a full listing…

CEGMA
Desktop

CEGMA Core Eukaryotic Genes Mapping Approach

A computational method for building a highly reliable set of gene annotations…

A computational method for building a highly reliable set of gene annotations in the absence of experimental data. CEGMA includes the use of profile-hidden Markov models to ensure the reliability of…

DDCSD
Desktop

DDCSD Distributed Divide-and-Conquer-based Signature Discovery

Uses a divide-and-conquer strategy to overcome the problem of processing larger…

Uses a divide-and-conquer strategy to overcome the problem of processing larger databases. DDCSD is not limited by the amount of memory available, and can find signatures in large databases, and…

Neptune
Desktop

Neptune

An efficient system for rapidly locating differentially abundant genomic…

An efficient system for rapidly locating differentially abundant genomic content in bacterial populations using an exact k-mer matching strategy, while accommodating k-mer mismatches. Neptune’s…

CaSSiS
Desktop

CaSSiS Comprehensive and Sensitive Signature Search

Computes comprehensive collections of sequence and sequence group specific…

Computes comprehensive collections of sequence and sequence group specific oligonucleotide signatures from large sets of hierarchically clustered nucleic acid sequence data. CaSSiS is based on the…

Panseq
Desktop
Web

Panseq

Determines the core and accessory regions among a collection of genomic…

Determines the core and accessory regions among a collection of genomic sequences based on user-defined parameters. Panseq readily extracts regions unique to a genome or group of genomes, identifies…

Comparative…
Web

Comparative genomics motif finding

Provides a motif discovery algorithm. Comparative genomics motifs finding is a…

Provides a motif discovery algorithm. Comparative genomics motifs finding is a comparative genomics approach using neither prior information about which genes might be coregulated nor a detailed…

GenomeBlast
Web

GenomeBlast

Performs a comparative analysis of small genomes. GenomeBlast identifies unique…

Performs a comparative analysis of small genomes. GenomeBlast identifies unique and shared, possibly homologous, coding sequences (CDS) sets among multiple genomes by detecting global sequence…

nWayComp
Desktop

nWayComp

Allows users to compare genomic sequences among multiple organisms. nWayComp…

Allows users to compare genomic sequences among multiple organisms. nWayComp automatically identifies homologous and unique genes among multiple species and/or strains to facilitate whole-genome…

GSIT
Web

GSIT Genomic Signature Identification Tool

Recognizes and validates genomic signs in a group of similar DNA sequences of…

Recognizes and validates genomic signs in a group of similar DNA sequences of microorganisms. GSIT is a web application that employs comparative genomics technique for identification of genomic…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.