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SaVanT | A web-based tool for the sample-level visualization of molecular signatures in gene expression profiles

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Allows visualization of signatures in user-generated expression profiles. SaVanT was constructed on a basis of 636 generated signatures from expression dataset collections that were supplemented with 10,349 signatures from MSigDB for a total of 10,985 signatures. It can be used to distinguish inflammatory patterns found between patients with different acute infections. This tool is able to recognize the neoplastic cell type in leukemia samples.

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SaVanT classification

SaVanT specifications

Unique identifier:
OMICS_23169
Interface:
Web user interface
Input data:
A matrix of gene expression values.
Computer skills:
Basic
Maintained:
Yes
Name:
SignAture VisuaAlizatioN Tool
Restrictions to use:
None
Output data:
An interactive heatmap.
Stability:
Stable

SaVanT support

Maintainer

  • Matteo Pellegrini <>

Credits

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Publications

Institution(s)

Department of Molecular, Cell, and Developmental Biology, University of California, Los Angeles, CA, USA; Division of Dermatology, David Geffen School of Medicine, University of California, Los Angeles, CA, USA; Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA, USA

Funding source(s)

Supported by NIH award 5T32HG002536–13, as well as U.S. DOE award DE-FC02-02ER63421.

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