sigNetTrainer specifications

Information


Unique identifier OMICS_19847
Name sigNetTrainer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Steffen Klamt <>

Publication for sigNetTrainer

sigNetTrainer in publications

 (2)
PMCID: 4816176
PMID: 26775695
DOI: 10.1038/cddis.2015.393

[…] differential network analysis approach., we also performed a thorough comparison of our method with other methods available for network reconstruction of direct and signed grns using cellnoptr and signettrainer. in this comparison, we measured the enrichment in experimentally validated interactions in the reconstructed grns, as well as the agreement between the grn models generated […]

PMCID: 4505829
PMID: 26225263
DOI: 10.1002/psp4.40

[…] high-throughput xmap luminex assays to elucidate the action mode of prominent nutraceuticals in terms of topology alterations of hcc-specific signaling networks. an optimization algorithm based on signettrainer, an integer linear programming formulation, was applied to construct networks linking signal transduction to cytokine secretion by combining prior knowledge of protein connectivity […]


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sigNetTrainer institution(s)
National Technical University of Athens, Athens, Greece; Max Planck Institute for Dynamics of Complex Technical Systems, Magdeburg, Germany
sigNetTrainer funding source(s)
Supported via European Social Fund (ESF) and Greek National funds through the Operational Program ‘‘Education and Lifelong Learning’’ of the National Strategic Reference Framework (NSRF) - Research Funding Program: ERC; by the German Federal Ministry of Education and Research (‘‘Virtual Liver’’ project (grant 0315744) and ‘‘JAK-Sys’’ project (grant 0316167B)) and by the Federal State of SaxonyAnhalt (Research Center ‘‘Dynamic Systems: Biosystems Engineering’’).

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