Sim3C specifications


Unique identifier OMICS_18424
Name Sim3C
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A community profile, some genomic sequences, an enzyme.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
biopython, intervaltree, numpy, scipy, tqdm, PyYAML
Maintained Yes




No version available


  • person_outline Matthew DeMaere

Publication for Sim3C

Sim3C citation


Identification of novel nesprin 1 binding partners and cytoplasmic matrin 3 in processing bodies

Mol Biol Cell
PMCID: 5170611
PMID: 27733621
DOI: 10.1091/mbc.E16-06-0346

[…] Sixty thousand U2OS cells were plated into each well of a six-well plate and cultured under standard growth conditions overnight. The following day, cells were transfected with 1 μl siM3N, siM3C or scrambled siRNA oligos (all at 20-μM stock solutions) using Hiperfect transfection reagent (Qiagen, Hilden, Germany). siM3N and siM3C were 5′GUCAUUCCAGCAGUCAUCUUU3′ and 5′GCUCCUCCAA­GUAGCAAUA […]

Sim3C institution(s)
The ithree institute, University of Technology Sydney, Sydney, NSW, Australia
Sim3C funding source(s)
Supported by Australian Research Council’s Discovery Projects funding scheme (project number: LP15010091).

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