Sim3C statistics

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Associated diseases

Associated diseases

Sim3C specifications


Unique identifier OMICS_18424
Name Sim3C
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A community profile, some genomic sequences, an enzyme.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
biopython, intervaltree, numpy, scipy, tqdm, PyYAML
Maintained Yes



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  • person_outline Matthew DeMaere <>

Publication for Sim3C

Sim3C in publication

PMCID: 5170611
PMID: 27733621
DOI: 10.1091/mbc.E16-06-0346

[…] sixty thousand u2os cells were plated into each well of a six-well plate and cultured under standard growth conditions overnight. the following day, cells were transfected with 1 μl sim3n, sim3c or scrambled sirna oligos (all at 20-μm stock solutions) using hiperfect transfection reagent (qiagen, hilden, germany). sim3n and sim3c were 5′gucauuccagcagucaucuuu3′ […]

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Sim3C institution(s)
The ithree institute, University of Technology Sydney, Sydney, NSW, Australia
Sim3C funding source(s)
Supported by Australian Research Council’s Discovery Projects funding scheme (project number: LP15010091).

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