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SIMBAL specifications

Information


Unique identifier OMICS_15761
Name SIMBAL
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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  • person_outline Daniel Haft <>

Publications for SIMBAL

SIMBAL in publications

 (4)
PMCID: 5523201
PMID: 28824280
DOI: 10.3897/zookeys.674.11435

[…] porter & l. stange (1m, 1f, cas; 1m, fsca); samme, 15/vii/1982, r. b. miller & l. stange (4f, fsca); samme, ca. trujillo, 1,500 m, 12–19/vii/1975, c. porter & l. stange (1m, 2f, ifml); simbal, 4/vii/1974, l. stanner & c. porter (?, ifml). lima: nr. castillo (1m, usnm); san isidro, at light, 6/ii/1977, c. p. kimball (1f, usnm); chosica, 2800 ft.,9/vi/??, parish coll., n. banks […]

PMCID: 4591603
PMID: 26448706
DOI: 10.3897/zookeys.519.6501

[…] pate, 1946 , pretiosus (fox, 1897)†: pa (oxapampa) , entypus dahlbom, 1843 , decoloratus (lepeletier, 1845)†: hu (monzón) , dumosus (spinola, 1851)†: la (jayanca), li (matucana), ll (simbal) , gigas (fabricius, 1804)†: uc (pucallpa) , molestus (banks, 1946): endemic, la (lambayeque), li (matucana), ll (simbal) , nitidus (banks, 1946): hu (cayumba) , peruvianus (rohwer, 1913): […]

PMCID: 3403918
PMID: 22559199
DOI: 10.1186/1471-2164-13-165

[…] several genes encoding putative enzymes of the coenyzme f420 biosynthesis pathway. these genes were identified based on the presence of their homologs among the methanogens. furthermore, using simbal analysis [], coenyzme f420 dependent enzymes have been predicted in halophilic archaea (e.g., np1902a, tigrfam 04024, d. haft, personal communication). nab. magadii predicted proteins […]

PMCID: 3023750
PMID: 21223593
DOI: 10.1186/1471-2164-12-21

[…] one each, in three unrelated classes of nicotinoproteins. the pattern suggests these variant enzymes require not only nad(p), but also the novel gene cluster. further study was conducted using simbal, a ppp-like tool, to search these nicotinoproteins for subsequences best correlated across multiple genomes to the presence of mycofactocin. for both the short chain dehydrogenase/reductase […]

SIMBAL institution(s)
J. Craig Venter Institute, Rockville, MD, USA; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
SIMBAL funding source(s)
This work was supported by the National Science Foundation under Grant No. 1458808 and by the Intramural Research Program of the NIH, National Library of Medicine.

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