SimCT statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SimCT
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Tool usage distribution map

This map represents all the scientific publications referring to SimCT per scientific context
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Associated diseases

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Popular tool citations

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SimCT specifications

Information


Unique identifier OMICS_29177
Name SimCT
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Version 0.012
Stability Stable
Maintained Yes

Download


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Versioning


No version available

Maintainers


  • person_outline CracTools
  • person_outline Nicolas Philippe

Additional information


http://cractools.gforge.inria.fr/softwares/simba/

Publication for SimCT

SimCT citations

 (2)
library_books

On the evaluation of the fidelity of supervised classifiers in the prediction of chimeric RNAs

2016
BioData Min
PMCID: 5090896
PMID: 27822312
DOI: 10.1186/s13040-016-0112-6

[…] using the FUSIM tool [], though the pipeline does not simulate RNA-seq data including chimeras, it only provides their associated sequences. The simulated data generator is packaged in a tools called SimCT (not yet published) that can easily integrate new complex chimeric events. […]

library_books

Unique metabolic features of pancreatic cancer stroma: relevance to the tumor compartment, prognosis, and invasive potential

2016
Oncotarget
PMCID: 5346648
PMID: 27623078
DOI: 10.18632/oncotarget.11893

[…] The following RNAi were employed, siMCT4 (Santa Cruz, SC-45892), HIF1α(Sigma, NM_181054). The shRNA against MCT4 was introduced by lenti-viral transduction as previously published []. […]


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SimCT institution(s)
SeqOne, IRMB, CHRU de Montpellier - Hopital St Eloi, Montpellier, France; Institute of Computational Biology, Montpellier, Montpellier, France; University Lille, CNRS, Centrale Lille, Inria, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, Lille, France; University Bordeaux, Inserm, BMGIC, U1035, Bordeaux, France
SimCT funding source(s)
Supported by the Fondation pour la Recherche Médicale (FRM, BIOINFO2013 call, grant noDBI20131228566), SATT AxLR, la Région Occitanie, and Montpellier Métropole Méditerranée. Institute of Computational Biology, Investissement d’Avenir.

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