SimGlycan statistics

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chevron_left Carbohydrate structure analysis Glycosylation identification Data preprocessing chevron_right
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SimGlycan specifications

Information


Unique identifier OMICS_05589
Name SimGlycan
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Windows
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes

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  • person_outline Beacon Designer Team <>

SimGlycan in publications

 (6)
PMCID: 5919578
PMID: 29698512
DOI: 10.1371/journal.pone.0196513

[…] ms/ms spectra using agilent masshunter b.06.00 (agilent technologies, santa clara, ca). for relative quantification, raw data was exported to .mzdata format with masshunter and then imported into simglycan enterprise edition 5.42 (premier biosoft, palo alto, ca) []. the os which had been confirmed by ms/ms were entered into the simglycan server as a custom library, and the software […]

PMCID: 5796461
PMID: 29430170
DOI: 10.2147/BTT.S141203

[…] masses were extracted using xic manager, and product ion spectrum of individual mass was checked to confirm glycan species. further, structural confirmation of each n-glycan species was done using simglycan® software., extracted glycans from sb005 and reference product were labeled with a fluorescent 2-ab dye. the excess amounts of dye were removed from the mixture by using glycoclean […]

PMCID: 5498624
PMID: 28585084
DOI: 10.1007/s00216-017-0406-7

[…] generate glycan compositions. glycanmass [] is another web-based program which calculates the mass of a glycan structure from its oligosaccharide composition., commercial software such as byonic and simglycan are powerful tools for the rapid detailed analysis of complex n- and o-linked glycan structures from the lc-ms/ms data of glycopeptides. byonic enables search for tens or even hundreds […]

PMCID: 4931634
PMID: 27187483
DOI: 10.3390/vaccines4020017

[…] england biolab, ipswich, ma, usa). after reductive amination with 2-ab, labeled glycans were resolved by lc using a waters acquity glycan beh amide column with both fluorescent and ms detection. simglycan software (premier biosoft, palo alto, ca, usa) was used for glycan identification., for disulfide bond analysis, gp 120 proteins were digested by trypsin with or without […]

PMCID: 4691109
PMID: 26690136
DOI: 10.3390/ijms161226165

[…] of potential glycan monosaccharide composition based on ms-derived molecular masses []. other glycan analysis tools used for ms and/or ms/ms data analysis include stat, sysbioware, glycolyzer, simglycan and glyco-peakfinder, some of which are publicly available., in addition to these (semi) automated tools for analysis of glycan data from lc-ms/ms data, efforts have been made towards […]


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