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SimGlycan specifications

Information


Unique identifier OMICS_05589
Name SimGlycan
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Windows
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Beacon Designer Team

SimGlycan citations

 (4)
library_books

Large scale intact glycopeptide identification by Mascot database search

2018
Sci Rep
PMCID: 5795011
PMID: 29391424
DOI: 10.1038/s41598-018-20331-2

[…] need additional informatics assistance to utilize them. Commercial tools on the other hand are designed to be user friendly, continuously developed further and upgraded based on the research demands. SimGlycan, GlycoQuest and Byonic are among the commercially available glycopeptide identification tools.SweetNET, a recently introduced bioinformatics workflow uses an iterative process where glycan d […]

library_books

Glycomic and glycoproteomic analysis of glycoproteins—a tutorial

2017
Anal Bioanal Chem
PMCID: 5498624
PMID: 28585084
DOI: 10.1007/s00216-017-0406-7

[…] nd generate glycan compositions. GlycanMass [] is another web-based program which calculates the mass of a glycan structure from its oligosaccharide composition.Commercial software such as Byonic and SimGlycan are powerful tools for the rapid detailed analysis of complex N- and O-linked glycan structures from the LC-MS/MS data of glycopeptides. Byonic enables search for tens or even hundreds of va […]

library_books

Mass Spectrometry Based N Glycomics of Colorectal Cancer

2015
Int J Mol Sci
PMCID: 4691109
PMID: 26690136
DOI: 10.3390/ijms161226165

[…] dation of potential glycan monosaccharide composition based on MS-derived molecular masses []. Other glycan analysis tools used for MS and/or MS/MS data analysis include STAT, SysBioWare, Glycolyzer, SimGlycan and Glyco-Peakfinder, some of which are publicly available.In addition to these (semi) automated tools for analysis of glycan data from LC-MS/MS data, efforts have been made towards integrat […]

library_books

Functional Interaction of Cockroach Allergens and Mannose Receptor (CD206) in Human Circulating Fibrocytes

2013
PLoS One
PMCID: 3667076
PMID: 23734186
DOI: 10.1371/journal.pone.0064105

[…] signed by comparison of measured m/z values with m/z values calculated based on putative composition of native glycans using the Functional Glycomics glycan database (www.functionalglycomics.org) and SimGlycan software (Premier Biosoft, Palo Alto, CA) . We found that natural purified cockroach allergen Bla g 2 contains putative structures that have a significant amount of glycans, and many of thes […]

Citations

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SimGlycan institution(s)
PREMIER Biosoft, CA, USA

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