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Large scale intact glycopeptide identification by Mascot database search
[…] need additional informatics assistance to utilize them. Commercial tools on the other hand are designed to be user friendly, continuously developed further and upgraded based on the research demands. SimGlycan, GlycoQuest and Byonic are among the commercially available glycopeptide identification tools.SweetNET, a recently introduced bioinformatics workflow uses an iterative process where glycan d […]
Glycomic and glycoproteomic analysis of glycoproteins—a tutorial
[…] nd generate glycan compositions. GlycanMass  is another web-based program which calculates the mass of a glycan structure from its oligosaccharide composition.Commercial software such as Byonic and SimGlycan are powerful tools for the rapid detailed analysis of complex N- and O-linked glycan structures from the LC-MS/MS data of glycopeptides. Byonic enables search for tens or even hundreds of va […]
Mass Spectrometry Based N Glycomics of Colorectal Cancer
[…] dation of potential glycan monosaccharide composition based on MS-derived molecular masses . Other glycan analysis tools used for MS and/or MS/MS data analysis include STAT, SysBioWare, Glycolyzer, SimGlycan and Glyco-Peakfinder, some of which are publicly available.In addition to these (semi) automated tools for analysis of glycan data from LC-MS/MS data, efforts have been made towards integrat […]
Functional Interaction of Cockroach Allergens and Mannose Receptor (CD206) in Human Circulating Fibrocytes
[…] signed by comparison of measured m/z values with m/z values calculated based on putative composition of native glycans using the Functional Glycomics glycan database (www.functionalglycomics.org) and SimGlycan software (Premier Biosoft, Palo Alto, CA) . We found that natural purified cockroach allergen Bla g 2 contains putative structures that have a significant amount of glycans, and many of thes […]
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