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similaRpeak specifications

Information


Unique identifier OMICS_10671
Name similaRpeak
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.12.0
Stability Stable
Requirements
stats, BiocGenerics, Rsamtools, rtracklayer, BiocStyle, GenomicAlignments, RUnit, rmarkdown, knitr, R6(>=2.0)
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Astrid Louise Deschenes <>

similaRpeak citation

library_books

metagene Profiles Analyses Reveal Regulatory Element’s Factor Specific Recruitment Patterns

2016
PMCID: 4990179
PMID: 27538250
DOI: 10.1371/journal.pcbi.1004751

[…] and to obtain a high level visual representation of the general occupancy pattern of a protein. here we present the r package metagene, the graphical interface imetagene and the companion package similarpeak. together, they provide a framework to integrate, summarize and compare the chip-seq enrichment signal from complex experimental designs. those packages identify and quantify similarities […]


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