simPATHy specifications


Unique identifier OMICS_14087
Name simPATHy
Alternative name simulating PATHways
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A graph and a covariance matrix associated to a reference condition.
Output data A dataset of observations coming from two conditions (reference and dysregulated) simulated from a multivariate normal distribution, covariance matrices of the two conditions, a summary of the parameters used for dysregulation.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.2
Stability Stable
Source code URL
Maintained Yes


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  • person_outline Chiara Romualdi <>

Publication for simulating PATHways

simPATHy institution(s)
Department of Biology, University of Padova, Padova, Italy; Department of Statistical Sciences, University of Padova, Padova, Italy
simPATHy funding source(s)
This work was supported by Italian Association for Cancer Research (IG17185), by the University of Padova and by the Italian Ministry of Education, University and Research.

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