SimPhy specifications


Unique identifier OMICS_13198
Name SimPhy
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Species or locus tree
Input format NEXUS
Output data Outputs consist of sequence alignments and a relational database that facilitate posterior analyses. SimPhy includes also a species tree file, a locus tree file with all the locus trees, and one gene tree file per locus tree (typically containing a single gene tree).
Operating system Unix/Linux, Mac OS
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Requirements GNU Scientific, GNU Multiple Precision Arithmetic, GNU MPFR, SQLite3
Maintained Yes



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  • person_outline Diego Mallo <>

SimPhy article

SimPhy institution(s)
Department of Biochemistry, Genetics and Immunology, University of Vigo, Vigo, Spain

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