Simple BL-SOM specifications
- Unique identifier:
- Alternative name:
- Command line interface, Graphical user interface
- Output data:
- Four files: “WTSPCA” that contains initial weight vectors generated by PCA, “WTSSOM” that contains the final weight vectors generated by the learning process of SOM, “CLSOM” that accumulates information on classification of objects in the self-organizing map, and “Convergence”.
- Operating system:
- Simple Batch-Learning Self-Organizing Map
- Software type:
- Restrictions to use:
- Output format:
- Computer skills:
- Java j2sdk
Simple BL-SOM distribution
Simple BL-SOM support
- Kazuki Saito <>
No open topic.
(Hirai et al., 2005)
Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics.
J Biol Chem.
PMID: 15866872 DOI: 10.1074/jbc.M502332200
(Hirai et al., 2004)
Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana.
Proc Natl Acad Sci U S A.
PMID: 15199185 DOI: 10.1073/pnas.0403218101
(Abe et al., 2003)
Informatics for unveiling hidden genome signatures.
PMID: 12671005 DOI: 10.1101/gr.634603
(Kanaya et al., 2001)
Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): characterization of horizontally transferred genes with emphasis on the E. coli O157 genome.
Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Chiba, Japan; Core Research for Evolutional Science and Technology, Japan Science and Technology Agency, Saitama, Japan; RIKEN Plant Science Center, Kanagawa, Japan; Institute for Botany, University of Hannover, Hannover, Germany; Phenomenome Discoveries Inc., Saskatoon, SK, Canada; Department of Bioinformatics and Genomics, Graduate School of Information Science, Nara Institute of Science and Technology, Nara, Japan; Ehime Women’s College, Ehime, Japan; Kazusa DNA Research Institute, Chiba, Japan; Max-Planck-Institute for Chemical Ecology, Jena, Germany
Supported in part by Core Research for Evolutional Science and Technology of Japan Science and Technology Agency, by grants-in-aid from the Ministry of Education, Science, Culture, Sports, and Technology, Japan, and by the project “Development of Fundamental Technologies for Controlling the Process of Material Production of Plants” from New Energy and Industrial Technology Development Organization.
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