Simpleaffy specifications

Information


Unique identifier OMICS_02034
Name Simpleaffy
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Affymetrix
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Simpleaffy article

Simpleaffy citations

 (2)
2015
PMCID: 4304400

[…] 54, and a collection of custom perl scripts. normalized gene expression values were generated by the robust multi-array averaging (rma) method using the bioconductor packages affy55 and simpleaffy56. all analyses were done at the so-called sequence level, i.e., data from probes representing the same gene were combined. statistical differences in gene expression between all samples […]

2012
PMCID: 3397951

[…] an extension for bioinformatics of the r statistical language (http://r-project.org). the data quality of 11 cel files obtained from the affymetrix chips was assessed with the affyplm [7], [27] and simpleaffy packages. the raw expression data were normalized using the function rma of the package affy [28], which replicates the standardization procedure of the affymetrix’s microarray suite (mas) […]

Simpleaffy institution(s)
Paterson Institute for Cancer Research, Manchester, UK

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