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Simpleaffy | A BioConductor package for Affymetrix Quality Control and data analysis

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Provides access to a variety of QC metrics for assessing the quality of RNA samples and of the intermediate stages of sample preparation and hybridization. Simpleaffy also offers fast implementations of popular algorithms for generating expression summaries and detection calls. It is designed to work alongside the core ‘affy’ package from BioConductor and provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like.

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Simpleaffy forum

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Simpleaffy classification

Simpleaffy specifications

Unique identifier:
OMICS_02034
Interface:
Command line interface
Biological technology:
Affymetrix
Programming languages:
R
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Stability:
Stable

Simpleaffy distribution

versioning

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Simpleaffy support

Documentation

Credits

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Publications

Institution(s)

Paterson Institute for Cancer Research, Manchester, UK

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