SIMPLEX specifications

Information


Unique identifier OMICS_00294
Name SIMPLEX
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data The raw sequence reads, their corresponding base calling quality values, and a list of genomic positions specifying the complete exome.
Input format FASTQ, FASTA
Output data A detailed summary report, files that can be used for viewing mapping results in Genome Browsers, and annotated lists of variants, which can be easily opened with office programs.
License GNU Affero General Public License version 3
Computer skills Advanced
Stability Stable

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Documentation


Maintainers


This tool is not maintained anymore.

Publication for SIMPLEX

SIMPLEX institution(s)
Division for Bioinformatics, Biocenter, Innsbruck Medical University, Innsbruck, Austria; Oncotyrol, Center for Personalized Cancer Medicine, Innsbruck, Austria; Division of Human Genetics, Biocenter, Innsbruck Medical University, Innsbruck, Austria
SIMPLEX funding source(s)
Supported by GENAU Bioinformatics Network (BIN III), by the "Bioinformatics Tyrol" project of the "Standortagentur Tyrol," and by the COMET Center ONCOTYROL.

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