SimRNA/SimRNAweb specifications

Information


Unique identifier OMICS_11621
Interface Web user interface
Restrictions to use None
Input data The simplest input consists of an RNA sequence to fold RNA de novo. Alternatively, a user can provide a 3D structure in the PDB format, for instance a preliminary model built with some other technique, to jump-start the modeling close to the expected final outcome. The user can optionally provide secondary structure and distance restraints, and can freeze a part of the starting 3D structure. SimRNAweb can be used to model single RNA sequences and RNA-RNA complexes (up to 52 chains).
Computer skills Basic
Version 3.20
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Janusz M. Bujnicki <>

Information


Unique identifier OMICS_11621
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Version 3.20
Stability Stable
Source code URL http://genesilico.pl/software/stand-alone/simrna
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Janusz M. Bujnicki <>

SimRNA/SimRNAweb articles

SimRNA/SimRNAweb institution(s)
Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland; Bioinformatics Laboratory, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Poznan, Poland
SimRNA/SimRNAweb funding source(s)
European Research Council (ERC) [StG grant RNA+P=123D grant]; Polish National Science Center [2014/12/T/NZ2/00501]; European Commission (E.C.) [REGPOT grant FishMed, contract number 316125]; ‘Ideas for Poland’ fellowship from the Foundation for Polish Science; E.C. structural funds [POIG.02.03.00-00–003/09]

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