SimRNA/SimRNAweb specifications

Unique identifier:
OMICS_11621
Restrictions to use:
None
Computer skills:
Basic
Stability:
Stable
Interface:
Web user interface
Input data:
The simplest input consists of an RNA sequence to fold RNA de novo. Alternatively, a user can provide a 3D structure in the PDB format, for instance a preliminary model built with some other technique, to jump-start the modeling close to the expected final outcome. The user can optionally provide secondary structure and distance restraints, and can freeze a part of the starting 3D structure. SimRNAweb can be used to model single RNA sequences and RNA-RNA complexes (up to 52 chains).
Version:
3.20
Maintained:
Yes

SimRNA/SimRNAweb specifications

Unique identifier:
OMICS_11621
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS
Version:
3.20
Source code URL:
http://genesilico.pl/software/stand-alone/simrna
Software type:
Application/Script
Restrictions to use:
Academic or non-commercial use
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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SimRNA/SimRNAweb support

Documentation

Maintainer

  • Janusz M. Bujnicki <>
  • Janusz M. Bujnicki <>

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Credits

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Publications

Institution(s)

Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland; Bioinformatics Laboratory, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Poznan, Poland

Funding source(s)

European Research Council (ERC) [StG grant RNA+P=123D grant]; Polish National Science Center [2014/12/T/NZ2/00501]; European Commission (E.C.) [REGPOT grant FishMed, contract number 316125]; ‘Ideas for Poland’ fellowship from the Foundation for Polish Science; E.C. structural funds [POIG.02.03.00-00–003/09]

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