SimSeq tool specifications


Unique identifier OMICS_07602
Name SimSeq tool
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A source RNA-seq dataset and a vector of computed normalization factors with one element for each column of the source dataset.
Output data A matrix of RNA-seq read counts.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 1.4.0
Stability Stable
Source code URL
Maintained Yes



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  • person_outline Samuel Benidt <>

Publication for SimSeq tool

SimSeq tool institution(s)
Department of Statistics, Iowa State University, Ames, IA, USA
SimSeq tool funding source(s)
Supported by the National Science Foundation [grant numbers IOS0922746, IOS1339348 and DMS1313224] and by the National Institute of General Medical Science (NIGMS) of the National Institutes of Health and the joint National Science Foundation/NIGMS Mathematical Biology Program [grant number R01GM109458].

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