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Provides a text-based way to read, summarize, and create SED-ML files. PhraSED-ML allows modelers to use simple text commands to encode various elements of SED-ML (models, tasks, simulations, and results) in a format easy to read and modify. The phraSED-ML is designed to be easily readable and writable without the need to reference the documentation at each turn. SED-ML continues to be developed by the community and changes to phraSED-ML will follow this development.

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phraSED-ML versioning

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phraSED-ML classification

phraSED-ML specifications

Software type:
Standalone
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
BSD 3-clause “New” or “Revised” License
Version:
1.0.3
Interface:
Command line interface
Output data:
Graph
Programming languages:
C++, Python, Other
Computer skills:
Advanced
Stability:
Stable
Source code URL:
https://sourceforge.net/p/phrasedml/code/HEAD/tree/

phraSED-ML support

Documentation

Credits

Publications

  • phraSED-ML: A paraphrased, human-readable adaptation of SED-ML.
    Published in: 2016
    PMID: 27774871

Institution(s)

University of Washington Department of Bioengineering, Seattle, WA, USA

Funding source(s)

This work was supported by NIGMS of the National Institutes of Health under award number R01GM081070.

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