- Unique identifier:
- Software type:
- Restrictions to use:
- Operating system:
- Unix/Linux, Mac OS, Windows
- Microsoft Visual C++, Python, Dendropy
- Simultaneous Alignment and Tree Estimation
- Command line interface, Graphical user interface
- Input data:
- An existing multiple sequence alignment method
- Computer skills:
- Source code URL:
- Randal Linder <>
No open topic.
SATé-II: Very Fast and Accurate Simultaneous Estimation of Multiple Sequence Alignments and Phylogenetic Trees.
PMID: 22139466 DOI: 10.1093/sysbio/syr095
Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees.
PMID: 19541996 DOI: 10.1126/science.1171243
Department of Computer Sciences, The University of Texas at Austin, Austin, TX, USA; Section of Integrative Biology, School of Biological Sciences, The University of Texas at Austin, Austin, TX, USA; Department of Ecology and Evolutionary Biology, University of Kansas at Lawrence, Lawrence, KS, USA; Department of Computer Science, Calvin College, Grand Rapids, MI, USA; Scientific Computing Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany
This research was supported by the U.S. NSF under grants DEB 0733029, ITR 0331453, ITR 0121680, EIA 0303609, ATOL-0733029, ATOL-0732920 and IGERT 0114387, the Emmy Noether program by the German Science Foundation (Deutsche Forschungsgemeinschaft), the Guggenheim Foundation and Microsoft Research New England.
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