SINEbase specifications

Information


Unique identifier OMICS_18551
Name SINEbase
Restrictions to use None
Community driven No
Data access Browse
User data submission Allowed
Maintained Yes

Maintainer


  • person_outline Dmitri Kramerov

Publication for SINEbase

SINEbase citations

 (2)
library_books

Well characterized sequence features of eukaryote genomes and implications for ab initio gene prediction

2016
Comput Struct Biotechnol J
PMCID: 4975701
PMID: 27536341
DOI: 10.1016/j.csbj.2016.07.002

[…] ary dynamics, diversity pattern, and biological function of repetitive sequences in eukaryote genomes have been intensively reviewed elsewhere , , .The specific databases, such as Repbase Update and SINEBase , provide platforms and computational tools for depositing, naming and annotating the repetitive sequences in eukaryotes. Meanwhile, various bioinformatic tools have been developed for findin […]

library_books

The Orthology Clause in the Next Generation Sequencing Era: Novel Reference Genes Identified by RNA seq in Humans Improve Normalization of Neonatal Equine Ovary RT qPCR Data

2015
PLoS One
PMCID: 4633174
PMID: 26536597
DOI: 10.1371/journal.pone.0142122

[…] mice across a plenitude of conditions [–]. The assay for the expressed repetitive element targeted a consensus sequence deduced from all equine repetitive element B (ERE-B) sequences available at the SINEBase database ([]; http://sines.eimb.ru/).Primers for the novel candidates, the universal RGs and the expressed repetitive element were designed in the Primer Express 2.0 program (Life Technologie […]

SINEbase institution(s)
Laboratory of Eukaryotic Genome Evolution, Engelhardt Institute of Molecular Biology, Moscow, Russia
SINEbase funding source(s)
Supported by Molecular and Cellular Biology Program of the Russian Academy of Sciences; Russian Foundation for Basic Research [project nos. 13-04-01678 and 11-04-00439-a].

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