scDNA-seq analysis steps

Single-cell genomics aims to provide new perspectives to our understanding of genetics by bringing the study of genomes to the cellular level. These tools are opening up new frontiers by dissecting the contributions of individual cells to the biology of ecosystems and…

Single-cell DNA sequencing data analysis bioinformatics software tools

Most Recent Tools

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SCNV
Desktop

SCNV

Features an efficient bin-free segmentation approach and provides the highest…

Features an efficient bin-free segmentation approach and provides the highest resolution possible for breakpoint detection and the subsequent copy number calling. SCNV is a toolkit that can auto-tune…

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SAG-QC
Desktop

SAG-QC

Identifies and excludes non-target sequences independent of database. SAG-QC…

Identifies and excludes non-target sequences independent of database. SAG-QC calculates the probability that a sequence was derived from contaminants by comparing k-mer compositions with the no…

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AneuFinder
Desktop

AneuFinder

Allows annotation of copy number changes in a fully automated fashion and…

Allows annotation of copy number changes in a fully automated fashion and quantification of copy number variations (CNV) heterogeneity between cells. AneuFinder quantifies aneuploidy in primary…

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Canu
Desktop

Canu

Is specifically designed for noisy single-molecule sequences. Canu introduces…

Is specifically designed for noisy single-molecule sequences. Canu introduces support for nanopore sequencing, halves depth-of-coverage requirements, and improves assembly continuity while…

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