Sharq specifications

Unique identifier:
OMICS_26760
Software type:
Pipeline/Workflow
Restrictions to use:
None
Output data:
A quality control (QC) report including plots and metrics.
Programming languages:
Perl, Python, R
Stability:
Stable
High performance computing:
Yes
Name:
Single-cell Hierarchical Assignment of Reads and Quality control
Interface:
Command line interface
Input format:
FASTQ
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
STAR, subread, SGE, Set::Scalar, mismatch, Math::Combinatories, Regexp::Optimizer, platediagnostics, SCutils, uuutils
Maintained:
Yes

versioning

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Sharq distribution

download

Sharq support

Maintainers

  • Frank Holstege <>
  • Tito Candelli <>
  • Philip Lijnzaad <>

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Publications

Institution(s)

Princess Maxima Center for Pediatric Oncology, Utrecht, the Netherlands; Hubrecht Institute-KNAW (Royal Netherlands Academy of Arts and Sciences), Utrecht, the Netherlands; University Medical Center Utrecht, Cancer Genomics Netherlands, Utrecht, the Netherlands

Funding source(s)

Supported by a grant from the European Research Council.

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