SiNVICT statistics

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Associated diseases

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SiNVICT specifications


Unique identifier OMICS_12625
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTQ, BAM
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Version 1.0
Stability Stable
g++, Boost
Maintained Yes



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  • person_outline S. Cenk Sahilp <>

Publication for SiNVICT

SiNVICT in publications

PMCID: 5852328
PMID: 29552334
DOI: 10.1016/j.csbj.2018.01.003

[…] (). in addition, several algorithms are dedicated to perform single-sample variant calling. these algorithms include snvmix2, shearwater, splinter, snver, outlyzer, pisces, isown, somvarius, and sinvict , , , , , , , , and fall into two categories., snvmix2, shearwater, splinter, snver, outlyzer, and pisces report all variants without distinguishing somatic and germline. snvmix2’s, like […]

PMCID: 5209852
PMID: 28049408
DOI: 10.1186/s12859-016-1417-7

[…] based on kidney tumor data, we compared the performance of nine state-of-the-art variant callers, namely deepsnv, gatk haplotypecaller, gatk unifiedgenotyper, jointsnvmix2, mutect, samtools, sinvict, somaticsniper, and varscan2. the comparison was done as a function of variant allele frequencies and coverage. our analysis revealed that deepsnv and jointsnvmix2 perform very well, […]

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SiNVICT institution(s)
School of Computing Science, Simon Fraser University, Burnaby, BC, Canada; MADD-Gen Graduate Program, Simon Fraser University, Burnaby, BC, Canada; School of Informatics and Computing, Indiana University, Bloomington, IN, USA; Vancouver Prostate Centre, Vancouver, BC, Canada; Department of Urologic Sciences, University of British Columbia, Vancouver, BC, Canada; School of Informatics and Computing, Indiana University, Bloomington, IN, USA
SiNVICT funding source(s)
Supported by NSERC Create MADD-Gen Training programme, NSERC Discovery Frontiers grant on ‘Cancer Genome Collaboratory’, Genome Canada and Canadian Cancer Society Research Institute Innovation grants, Terry Fox Research Institute New Frontiers Program (grant no. TFF116129), Canadian Cancer Society (grant no. 702837) and Prostate Cancer Canada (grant no. D2014-13) and in part by the Movember Foundation.

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