SIPSim specifications

Information


Unique identifier OMICS_28308
Name SIPSim
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input data A set of reference genomes a description of the experimental design, including the number of gradients for labeled treatments and unlabeled controls.
Input format FASTA+TXT
Operating system Unix/Linux
Programming languages C++, Python, R
License Academic Free License version 3.0, MIT License
Computer skills Advanced
Stability Stable
Requirements
boost-python, scipy libgrfortran, scipy MKL
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainers


Additional information


https://github.com/nick-youngblut/SIPSim#tutorials

Publication for SIPSim

SIPSim institution(s)
School of Integrative Plant Science, Cornell University, Ithaca, NY, USA
SIPSim funding source(s)
Supported by the Department of Energy, Office of Biological and Environmental Research Genomic Science Program under Award Numbers DE-SC0010558 and DE-SC0004486.

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