Sircah statistics

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Citations per year

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Popular tool citations

chevron_left Alternative splicing events identification Intron retention detection Exon skipping detection Alternative splicing visualization chevron_right
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Tool usage distribution map

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Associated diseases

Associated diseases

Sircah specifications

Information


Unique identifier OMICS_06156
Name Sircah
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format GFF3
Output format XML
Operating system Unix/Linux
Programming languages Python
Database management system MySQL, PostgreSQL, SQLite
License Other
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
elementtree, matplotlib
Maintained Yes

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Publication for Sircah

Sircah in publication

PMCID: 2830987
PMID: 20163725
DOI: 10.1186/1471-2164-11-114

[…] of alternative splicing in chlamydomonas reinhardtii using its recently completed genome sequence and all available ests and cdnas., our analysis of as using blat and a modified version of the sircah tool revealed as of 498 transcriptional units with 611 events, representing about 3% of the total number of genes. as in land plants, intron retention is the most prevalent form of as. […]


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Sircah institution(s)
Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany

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