Sircah statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.


Citations per year

Citations chart

Popular tool citations

chevron_left Alternative splicing events identification Intron retention detection Exon skipping detection Alternative splicing visualization chevron_right
Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

Sircah specifications


Unique identifier OMICS_06156
Name Sircah
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format GFF3
Output format XML
Operating system Unix/Linux
Programming languages Python
Database management system MySQL, PostgreSQL, SQLite
License Other
Computer skills Advanced
Version 1.0
Stability Stable
elementtree, matplotlib
Maintained Yes



Add your version

Publication for Sircah

Sircah in publication

PMCID: 2830987
PMID: 20163725
DOI: 10.1186/1471-2164-11-114

[…] of alternative splicing in chlamydomonas reinhardtii using its recently completed genome sequence and all available ests and cdnas., our analysis of as using blat and a modified version of the sircah tool revealed as of 498 transcriptional units with 611 events, representing about 3% of the total number of genes. as in land plants, intron retention is the most prevalent form of as. […]

To access a full list of publications, you will need to upgrade to our premium service.

Sircah institution(s)
Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany

Sircah reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Sircah