Siren specifications

Information


Unique identifier OMICS_29882
Name Siren
Alternative name Sparse Isotope RegressioN
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A precursor spectra.
Input format MS1
Output data A file with identified elution peaks.
Output format TXT
Operating system Unix/Linux
Programming languages Python
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Requirements
numpy, scikit-learn, scipy
Maintained Yes

Versioning


No version available

Maintainers


  • person_outline Alex Ken Hu
  • person_outline William Stafford Noble

Additional information


https://noble.gs.washington.edu/proj/siren

Publication for Sparse Isotope RegressioN

Siren institution(s)
Department of Genome Sciences University of Washington, Seattle, WA, USA; Department of Computer Science and Engineering University of Washington, Seattle, WA, USA
Siren funding source(s)
Supported by National Institutes of Health awards R01 GM121818 and P41 GM103533.

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