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Small interfering RNA databases | RNA interference

Short interfering RNAs (siRNAs) are a popular method for gene-knockdown, acting by degrading the target mRNA. Before performing experiments it is invaluable to locate and evaluate previous knockdown experiments for the gene of interest.Source…
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NSDNA
Dataset

NSDNA Nervous System Disease NcRNAome Atlas

A manually curated database that provides comprehensive experimentally…

A manually curated database that provides comprehensive experimentally supported associations about nervous system diseases (NSDs) and noncoding RNAs (ncRNAs). NSDNA database documents 24713…

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Pln24NT
Dataset

Pln24NT

Centralizes 24 nucleotide small interfering RNA (24-nt siRNA) loci and…

Centralizes 24 nucleotide small interfering RNA (24-nt siRNA) loci and information, including fundamental locus information, expression profiles and annotation of transposon elements, from…

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RNAi Codex
Dataset

RNAi Codex

Allows researchers worldwide access to information as well as allow purchase of…

Allows researchers worldwide access to information as well as allow purchase of the constructs. RNAi Codex holds data from the Hannon–Elledge shRNA library and allows the use of biologist-friendly…

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VIRsiRNAdb
Dataset

VIRsiRNAdb

A manually curated database having comprehensive details of 1358 siRNA/shRNA…

A manually curated database having comprehensive details of 1358 siRNA/shRNA targeting viral genome regions. Further, wherever available, information regarding alternative efficacies of above 300…

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siRNAdb
Dataset

siRNAdb

Provides a gene-centric view of siRNA experimental data, including siRNAs of…

Provides a gene-centric view of siRNA experimental data, including siRNAs of known efficacy and siRNAs predicted to be of high efficacy by a combination of methods. Linked to these sequences is…

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CSRDB
Dataset

CSRDB Cereal small RNAs Database

A bioinformatics resource for cereal crops consisting of large-scale datasets…

A bioinformatics resource for cereal crops consisting of large-scale datasets of maize and rice smRNA sequences generated by high-throughput pyrosequencing.

HIVsirDB
Dataset

HIVsirDB

A manually curated database of HIV inhibiting siRNAs that provides…

A manually curated database of HIV inhibiting siRNAs that provides comprehensive information about each siRNA or shRNA. HIVsirDB structure contains sixteen fields including siRNA sequence, HIV…

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EbolaVCR
Dataset

EbolaVCR Ebola Virus Computational Resources

In silico resources developed to facilitate scientific community fighting…

In silico resources developed to facilitate scientific community fighting against deadly virus EBOLA. EbolaVCR enlists possible vaccine candidates, therapeutic siRNAs and other related resources.…

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siRNAmod
Dataset

siRNAmod

A specialized databank for chemically modified siRNAs. siRNAmod contains a…

A specialized databank for chemically modified siRNAs. siRNAmod contains a total of 4894 chemically modified-siRNA sequences, comprising 128 unique chemical modifications on different positions with…

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siRecords
Dataset

siRecords

A database of siRNAs experimentally tested by researchers with consistent…

A database of siRNAs experimentally tested by researchers with consistent efficacy ratings. This database will help siRNA researchers develop more reliable siRNA design rules; in the meantime,…

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scsR
Desktop

scsR

Corrects genome-wide siRNA screens for seed mediated off-target effect. ScsR…

Corrects genome-wide siRNA screens for seed mediated off-target effect. ScsR offers suitable functions to identify the effective seeds/miRNAs and to visualize their effect. In example, it presents…

VAD
Dataset

VAD Validated Antibody Database

Offers information about 2 million products, submitted by a reagent provider…

Offers information about 2 million products, submitted by a reagent provider partners. All reagents are organized according to genes, species, reagent types (antibodies, recombinant proteins, ELISA,…

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MIT/ICBP siRNA…
Dataset

MIT/ICBP siRNA Database

Aims to provide a resource for researchers looking for validated siRNAs against…

Aims to provide a resource for researchers looking for validated siRNAs against target genes, with an emphasis on genes potentially involved in cancer. The MIT/ICBP siRNA database has basic…

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HuSiDa
Dataset

HuSiDa Human siRNA Database

Provides sequences of published functional siRNA molecules targeting human…

Provides sequences of published functional siRNA molecules targeting human genes and important technical details of the corresponding gene silencing experiments, including the mode of siRNA…

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RNAiAtlas
Dataset

RNAiAtlas

Provides a siRNA oligonucleotide data from different sources and companies, and…

Provides a siRNA oligonucleotide data from different sources and companies, and visualize interactions between siRNA oligo and predicted off-target.

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