siRNAdb specifications

Information


Unique identifier OMICS_11153
Name siRNAdb
Restrictions to use Academic or non-commercial use
Database management system MySQL
Data access File download, Browse
User data submission Allowed
Maintained No

Publication for siRNAdb

siRNAdb citations

 (2)
library_books

Small RNA profiling for identification of miRNAs involved in regulation of saponins biosynthesis in Chlorophytum borivilianum

2017
BMC Plant Biol
PMCID: 5745966
PMID: 29281971
DOI: 10.1186/s12870-017-1214-0

[…] eads were then processed and 5′ and 3′ adapter sequences were eliminated using Cutadapt tool (v-1.3) []. Remaining reads were then aligned against a number of databases like GtRNAdb, Rfam, piRNABank, siRNAdb, NCBI Genbank, deepBase to eliminate other non-coding RNAs like tRNA, rRNA, piRNA, siRNA, snRNA, and snoRNA, respectively using Bowtie2 program (version 2.1.0) []. The remaining reads were use […]

library_books

Databases and resources for human small non coding RNAs

2011
Hum Genomics
PMCID: 3500172
PMID: 21504869
DOI: 10.1186/1479-7364-5-3-192

[…] iRNAs [,]. More recently, other sources of endo-siRNAs have been identified, such as convergent mRNA transcripts and sense-antisense pairs []. To date, there is only one database specific for siRNAs, siRNAdb,[] which contains the collections of endogenous and exogenous siRNA molecules from the literature that have been experimentally verified. Moreover, siRNAdb also includes predicted siRNAs based […]

siRNAdb institution(s)
Center for Genomics and Bioinformatics, Karolinska Institutet, Stockholm, Sweden

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