siRNAdb specifications


Unique identifier OMICS_11153
Name siRNAdb
Restrictions to use Academic or non-commercial use
Database management system MySQL
Data access File download, Browse
User data submission Allowed
Maintained No

Publication for siRNAdb

siRNAdb citations


Small RNA profiling for identification of miRNAs involved in regulation of saponins biosynthesis in Chlorophytum borivilianum

BMC Plant Biol
PMCID: 5745966
PMID: 29281971
DOI: 10.1186/s12870-017-1214-0

[…] eads were then processed and 5′ and 3′ adapter sequences were eliminated using Cutadapt tool (v-1.3) []. Remaining reads were then aligned against a number of databases like GtRNAdb, Rfam, piRNABank, siRNAdb, NCBI Genbank, deepBase to eliminate other non-coding RNAs like tRNA, rRNA, piRNA, siRNA, snRNA, and snoRNA, respectively using Bowtie2 program (version 2.1.0) []. The remaining reads were use […]


Databases and resources for human small non coding RNAs

Hum Genomics
PMCID: 3500172
PMID: 21504869
DOI: 10.1186/1479-7364-5-3-192

[…] iRNAs [,]. More recently, other sources of endo-siRNAs have been identified, such as convergent mRNA transcripts and sense-antisense pairs []. To date, there is only one database specific for siRNAs, siRNAdb,[] which contains the collections of endogenous and exogenous siRNA molecules from the literature that have been experimentally verified. Moreover, siRNAdb also includes predicted siRNAs based […]

siRNAdb institution(s)
Center for Genomics and Bioinformatics, Karolinska Institutet, Stockholm, Sweden

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