SIRW specifications

Information


Unique identifier OMICS_30227
Name SIRW
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Chenna Ramu

Publication for SIRW

SIRW citations

 (2)
library_books

ELM: the status of the 2010 eukaryotic linear motif resource

2009
Nucleic Acids Res
PMCID: 2808914
PMID: 19920119
DOI: 10.1093/nar/gkp1016

[…] valuate whether there is statistical support for motif enrichment (,). Enrichment of motifs with UniProt GO terms and other keywords can sometimes provide statistical support for sets of motifs (,,). SIRW is an online tool (http://sirw.embl.de/index.html) that allows keyword exploration for RegExps (). If enrichment is found, SIRW can provide a probability estimate using Fisher’s Exact Test. Of co […]

library_books

KEPE—a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors

2008
Bioinformatics
PMCID: 2638927
PMID: 19033273
DOI: 10.1093/bioinformatics/btn594

[…] loop of the PHD-finger (where an insertion of 15 residues or more is often found, SMART: SM00249), they could be potentially accessible for interaction.Results of combined motif–keyword searches with SIRW are summarized in : Several terms show enrichments that are highly significant according to the Fisher's exact test. The enrichment was particularly significant with the ‘transcription’, ‘bzip’ a […]

SIRW institution(s)
European Molecular Biology Laboratory, Heidelberg, Germany

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