SISSRs specifications


Unique identifier OMICS_00463
Alternative name Site Identification from Short Sequence Reads
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some data file(s) containing genomic coordinates of the mapped reads or tags.
Input format BED
Output data The summary of the test and control datasets, the list of command line and estimated parameters which SISSRs used to process the data, and the list of binding sites identified using the statistical thresholds chosen by the user.
Operating system Unix/Linux, Mac OS
Programming languages Perl
Computer skills Advanced
Version 1.4
Stability Stable
Maintained Yes



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  • person_outline Raja Jothi <>

Publication for Site Identification from Short Sequence Reads

SISSRs institution(s)
National Institutes of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA
SISSRs funding source(s)
Supported by the Intramural Research Program of the National Institutes of Health, National Institute of Environmental Health Sciences (Project number ES102625–02).

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