SISRS specifications


Unique identifier OMICS_09108
Name Site Identification from Short Read Sequences
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Paired reads in fastq format
Output data Nexus file with variable sites in a single alignment
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.6
Stability Stable
Requirements Velvet, Bowtie, BioPython, Samtools, GNU Parallel
Maintained Yes


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  • person_outline Rachel S. Schwartz <>

SISRS article

SISRS institution(s)
The Biodesign Institute, Arizona State University, Tempe, AZ, USA; School of Human Evolution and Social Change, Arizona State University, Tempe, AZ, USA; Department of Anthropology, University of California – Santa Cruz, Santa Cruz, CA, USA; School of Life Sciences, Arizona State University, Tempe, AZ, USA

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