SISSRs specifications

Unique identifier:
OMICS_00463
Software type:
Package/Module
Restrictions to use:
None
Input format:
BED
Operating system:
Unix/Linux, Mac OS
Computer skills:
Advanced
Stability:
Stable
Name:
Site Identification from Short Sequence Reads
Interface:
Command line interface
Input data:
Some data file(s) containing genomic coordinates of the mapped reads or tags.
Output data:
The summary of the test and control datasets, the list of command line and estimated parameters which SISSRs used to process the data, and the list of binding sites identified using the statistical thresholds chosen by the user.
Programming languages:
Perl
Version:
1.4
Maintained:
Yes

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SISSRs distribution

download

SISSRs support

Documentation

Maintainer

  • Raja Jothi <>

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Publications

Institution(s)

National Institutes of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA

Funding source(s)

Supported by the Intramural Research Program of the National Institutes of Health, National Institute of Environmental Health Sciences (Project number ES102625–02).

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