SiteEngine protocols

SiteEngine specifications


Unique identifier OMICS_10537
Name SiteEngine
Interface Web user interface
Restrictions to use None
Input data Two protein structures.
Output data A superimposition and a list of physicochemical properties.
Output format PDB
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Alexandra Shulman-Peleg <>

Publications for SiteEngine

SiteEngine IN pipeline

PMCID: 4339745
PMID: 25638036
DOI: 10.1186/s12859-015-0471-x

[…] reasonably accurate in capturing the physical properties of interfaces., the performance of pcalign is compared with two existing methods, ialign with its sequence-order independent version and i2i-siteengine [12], by testing how well these methods can distinguish highly similar interfaces from less similar ones. we manually collected from the database, structural classification […]

SiteEngine institution(s)
School of Computer Science, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv, Israel; Sackler Institute of Molecular Medicine, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel; Basic Research Program, SAIC-Frederick Inc., Laboratory of Experimental and Computational Biology NCI-Frederick, Frederick, MD, USA
SiteEngine funding source(s)
Supported by Federal funds from the National Cancer Institute, National Institutes of Health, under contract number NO1-CO-12400.

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