SL Finder specifications

Information


Unique identifier OMICS_16106
Name SL Finder
Software type Framework/Library
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Costas Maranas

Additional information


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Publication for SL Finder

SL Finder citation

library_books

Using Gene Essentiality and Synthetic Lethality Information to Correct Yeast and CHO Cell Genome Scale Models

2015
PMCID: 4693185
PMID: 26426067
DOI: 10.3390/metabo5040536

[…] ndition in minimal media and (ii) for the CHO 1.2 [] model under aerobic conditions and minimal essential media [] to identify essential reactions (for double, triple and higher order) deletions. The SL finder [] identifies reaction (or combination thereof) in the metabolic network whose removal would restrict the maximum biomass below a pre-specified cutoff. This is solved using a min-max mixed-i […]

SL Finder institution(s)
Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA

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