sl1p statistics

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Citations per year

Number of citations per year for the bioinformatics software tool sl1p
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Tool usage distribution map

This map represents all the scientific publications referring to sl1p per scientific context
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Associated diseases

This word cloud represents sl1p usage per disease context
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Popular tool citations

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Protocols

sl1p specifications

Information


Unique identifier OMICS_20561
Name sl1p
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainers


  • person_outline Michael Surette
  • person_outline Fiona Whelan

Publication for sl1p

sl1p citations

 (2)
call_split

High salt diet exacerbates colitis in mice by decreasing Lactobacillus levels and butyrate production

2018
Microbiome
PMCID: 5865374
PMID: 29566748
DOI: 10.1186/s40168-018-0433-4
call_split See protocol

[…] Custom, in-house Perl scripts were developed to process the sequences after Illumina sequencing []. The sl1p pipeline is open source and publicly available at https://bitbucket.org/fwhelan/sl1p. Briefly, Cutadapt [] was used to trim any over-read, and paired-end sequences were aligned with PANDAseq [], […]

library_books

Non digestible oligosaccharides directly regulate host kinome to modulate host inflammatory responses without alterations in the gut microbiota

2017
Microbiome
PMCID: 5635512
PMID: 29017607
DOI: 10.1186/s40168-017-0357-4

[…] The 16S rRNA gene sequence analysis pipeline used during the current study is freely available at https://bitbucket.org/fwhelan/sl1p []. The datasets generated and analyzed during this study and PICRUSt analysis code are available in the Figshare repository, 10.6084/m9.figshare.5425510.v1. […]


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sl1p institution(s)
Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Canada; Department of Medicine, McMaster University, Hamilton, Canada
sl1p funding source(s)
Supported by grants from Cystic Fibrosis Canada to MGS; a Cystic Fibrosis Canada Doctoral Studentship and a Canadian Institutes of Health Research (CIHR) Fredrick Banting and Charles Best Canadian Graduate Scholarship; a Canada Research Chair in Interdisciplinary Microbiome Research.

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