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sl1p

Automates the processing of raw 16S rRNA gene sequencing data. sl1p allows users to make human-readable figures, graphs, and tables to simplify access to the collected data. This tool is developed for automated, reproducible, and accurate processing of paired-end amplicon FASTQ data. It works in easy way to be accessible to the microbiologist without detailed bioinformatic training.

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sl1p classification

sl1p specifications

Software type:
Pipeline/Workflow
Restrictions to use:
None
Programming languages:
Perl
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

sl1p distribution

versioning

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sl1p support

Documentation

Maintainers

Credits

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Publications

Institution(s)

Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Canada; Department of Medicine, McMaster University, Hamilton, Canada

Funding source(s)

Supported by grants from Cystic Fibrosis Canada to MGS; a Cystic Fibrosis Canada Doctoral Studentship and a Canadian Institutes of Health Research (CIHR) Fredrick Banting and Charles Best Canadian Graduate Scholarship; a Canada Research Chair in Interdisciplinary Microbiome Research.

Link to literature

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