sl1p statistics

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Citations per year

Number of citations per year for the bioinformatics software tool sl1p

Tool usage distribution map

This map represents all the scientific publications referring to sl1p per scientific context
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Associated diseases

This word cloud represents sl1p usage per disease context

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sl1p specifications


Unique identifier OMICS_20561
Name sl1p
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes




No version available



  • person_outline Michael Surette
  • person_outline Fiona Whelan

Publication for sl1p

sl1p citations


High salt diet exacerbates colitis in mice by decreasing Lactobacillus levels and butyrate production

PMCID: 5865374
PMID: 29566748
DOI: 10.1186/s40168-018-0433-4
call_split See protocol

[…] Custom, in-house Perl scripts were developed to process the sequences after Illumina sequencing []. The sl1p pipeline is open source and publicly available at Briefly, Cutadapt [] was used to trim any over-read, and paired-end sequences were aligned with PANDAseq [], […]


Non digestible oligosaccharides directly regulate host kinome to modulate host inflammatory responses without alterations in the gut microbiota

PMCID: 5635512
PMID: 29017607
DOI: 10.1186/s40168-017-0357-4

[…] The 16S rRNA gene sequence analysis pipeline used during the current study is freely available at []. The datasets generated and analyzed during this study and PICRUSt analysis code are available in the Figshare repository, 10.6084/m9.figshare.5425510.v1. […]

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sl1p institution(s)
Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Canada; Department of Medicine, McMaster University, Hamilton, Canada
sl1p funding source(s)
Supported by grants from Cystic Fibrosis Canada to MGS; a Cystic Fibrosis Canada Doctoral Studentship and a Canadian Institutes of Health Research (CIHR) Fredrick Banting and Charles Best Canadian Graduate Scholarship; a Canada Research Chair in Interdisciplinary Microbiome Research.

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