sl1p statistics

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Associated diseases

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sl1p specifications

Information


Unique identifier OMICS_20561
Name sl1p
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Michael Surette <>
  • person_outline Fiona Whelan <>

Publication for sl1p

sl1p in publication

PMCID: 5865374
PMID: 29566748
DOI: 10.1186/s40168-018-0433-4

[…] from 4 weeks hsd group. the 16s rrna samples metadata table is available in additional file ., custom, in-house perl scripts were developed to process the sequences after illumina sequencing []. the sl1p pipeline is open source and publicly available at https://bitbucket.org/fwhelan/sl1p. briefly, cutadapt [] was used to trim any over-read, and paired-end sequences were aligned with pandaseq [], […]


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sl1p institution(s)
Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Canada; Department of Medicine, McMaster University, Hamilton, Canada
sl1p funding source(s)
Supported by grants from Cystic Fibrosis Canada to MGS; a Cystic Fibrosis Canada Doctoral Studentship and a Canadian Institutes of Health Research (CIHR) Fredrick Banting and Charles Best Canadian Graduate Scholarship; a Canada Research Chair in Interdisciplinary Microbiome Research.

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