Slicembler specifications

Information


Unique identifier OMICS_09314
Name Slicembler
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Beta
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Hamid Mirebrahim <>

Publication for Slicembler

Slicembler in publication

PMCID: 5242441
PMID: 28099457
DOI: 10.1371/journal.pone.0169662

[…] before soapdenovo2 was published and incorporates soapdenovo v1.05 and v1.06 as integral assembly components, using optimized parameters and revised error correction as well as scaffolding steps. slicembler [] is a pipeline designed for ultra deep sequencing datasets using a “divide and conquer” approach. the read dataset is evenly divided into subsets, which are then assembled independently […]


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Slicembler institution(s)
Department of Computer Science and Engineering; Department of Botany and Plant Sciences, University of California, Riverside, CA, USA
Slicembler funding source(s)
This work was supported in part by the U.S. National Science Foundation [DBI-1062301] and [IIS-1302134], by the USDA National Institute of Food and Agriculture [2009-65300-05645], by the USAID Feed the Future program [AID-OAA-A-13-00070] and the UC Riverside Agricultural Experiment Station Hatch Project CA-R-BPS-5306-H.

Slicembler review

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Marco

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Desktop
poor manual and user unfriendly