Slicembler statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Slicembler

Tool usage distribution map

This map represents all the scientific publications referring to Slicembler per scientific context
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Associated diseases


Popular tool citations

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Slicembler specifications


Unique identifier OMICS_09314
Name Slicembler
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Beta
Maintained Yes


No version available



  • person_outline Hamid Mirebrahim

Publication for Slicembler

Slicembler citation


Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist’s Perspective Not Only Size Matters!

PLoS One
PMCID: 5242441
PMID: 28099457
DOI: 10.1371/journal.pone.0169662

[…] tly before SOAPdenovo2 was published and incorporates SOAPdenovo v1.05 and v1.06 as integral assembly components, using optimized parameters and revised error correction as well as scaffolding steps. SLICEMBLER [] is a pipeline designed for ultra deep sequencing datasets using a “divide and conquer” approach. The read dataset is evenly divided into subsets, which are then assembled independently u […]

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Slicembler institution(s)
Department of Computer Science and Engineering; Department of Botany and Plant Sciences, University of California, Riverside, CA, USA
Slicembler funding source(s)
This work was supported in part by the U.S. National Science Foundation [DBI-1062301] and [IIS-1302134], by the USDA National Institute of Food and Agriculture [2009-65300-05645], by the USAID Feed the Future program [AID-OAA-A-13-00070] and the UC Riverside Agricultural Experiment Station Hatch Project CA-R-BPS-5306-H.

Slicembler review

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poor manual and user unfriendly