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Slicer Detector specifications

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Unique identifier OMICS_16362
Name Slicer Detector
Interface Web user interface
Restrictions to use None
Input data The genomic sequence, the selected database.
Input format FASTA
Output data The reported slicers, the report of alignment between the genes and slicers.
Output format FASTA
Programming languages Javascript, Perl
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for Slicer Detector

Slicer Detector citation

library_books

Finding MicroRNA Targets in Plants: Current Status and Perspectives

2012
PMCID: 5054207
PMID: 23200136
DOI: 10.1016/j.gpb.2012.09.003

[…] ch. Additionally, PAREsnip employs cross-sample conservation of both sRNA and degradome sequences to reduce false predictions.Another web tool, SoMART, is a collection of tools to process sRNAs . Its slicer detector tool can predict sRNAs that could target the user-provided transcript, then the dRNA mapper tool can be used to align degradome sequences to the transcript. The server was recently upd […]


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Slicer Detector institution(s)
Department of Plant and Microbial Biology, Plant Gene Expression Center, University of California, Berkeley, CA, USA; United States Department of Agriculture-Agricultural Research Services, Albany, CA, USA
Slicer Detector funding source(s)
This work was supported by the National Science Foundation Plant Genome Research Program Grant (DBI-0218166) and the United States Department of Agriculture (CRIS 5335-22000-007-00D).

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