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Slidepath specifications


Unique identifier OMICS_00818
Name Slidepath
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Advanced
Stability No
Maintained No


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Slidepath citations


Silicosis and Silica Induced Autoimmunity in the Diversity Outbred Mouse

Front Immunol
PMCID: 5932595
PMID: 29755467
DOI: 10.3389/fimmu.2018.00874

[…] sectioning (5 µm), and staining (hematoxylin and eosin and trichrome) were done by tsri’s histology core. formalin fixed paraffin-embedded slides were scanned and images stored on digital image hub (slidepath, dublin, ireland). lungs were scored under blinded conditions. the four right lobes and the single left lung was scored for the percent of the lobe affected by alveolitis (maximum score […]


Long term deficiency of vitamin D in germ cell testicular cancer survivors

PMCID: 5940414
PMID: 29765521
DOI: 10.18632/oncotarget.24925

[…] digitalized with the sl801 autoloader and leica scn400 scanning system (leica microsystems; concord, ontario, canada) at magnification equivalent to ×40. the images were subsequently stored in the slidepath digital imaging hub (dih; leica microsystems) of the vancouver prostate centre. the scoring method used was based on assigning a value on a four-point scale to each immunostain. […]


A novel high throughput immunofluorescence analysis method for quantifying dystrophin intensity in entire transverse sections of Duchenne muscular dystrophy muscle biopsy samples

PLoS One
PMCID: 5868811
PMID: 29579078
DOI: 10.1371/journal.pone.0194540

[…] settings were established on sections of two paediatric controls and the average value was used to acquire patients’ sections. scanned images were stored on a fileserver viewed and managed on the slidepath digital image hub (leica microsystem, milton keynes, uk). analysis was carried out with an in house script developed in definiens architect software (version 6.0, definiens, munich, […]


Experimental sheep BSE prions generate the vCJD phenotype when serially passaged in transgenic mice expressing human prion protein

PMCID: 5946165
PMID: 29406965
DOI: 10.1016/j.jns.2017.12.038

[…] eosin (h&e) staining. positive controls for the staining technique were used throughout. all slides were digitally scanned on a leica scn400 instrument, and images were captured from the leica slidepath software and composed with adobe photoshop. abnormal prp deposition in vcjd brain is distinguished by the presence of abundant florid prp plaques consisting of a round amyloid core […]


Single cell polarity in liquid phase facilitates tumour metastasis

Nat Commun
PMCID: 5830403
PMID: 29491397
DOI: 10.1038/s41467-018-03139-6

[…] with the bond max fast red-kit (bond polymer refine red detection, ds9390). slides were scanned using a scn400 slide scanner (leica) and analysed using the tissue ia image analysis software (slidepath, leica)., cells were detached using versene/edta, incubated in dmem for 30 min, fixed in suspension in 4% formaldehyde, washed with pbs and tris buffer (100 mm tris, ph = 7.4, 50 mm nacl), […]


Targeting ataxia telangiectasia mutated and Rad3 related kinase (ATR) in PTEN deficient breast cancers for personalized therapy

Breast Cancer Res Treat
PMCID: 5945733
PMID: 29396668
DOI: 10.1007/s10549-018-4683-4

[…] then scanned into high-resolution digital images (0.45 lm/pixel) using a nanozoomer slide scanner (hamamtsu photonics, welwyn garden city, uk) and accessed using a web-based interface (distiller, slidepath ltd, dublin, ireland). they were scored at ×20 magnification using a minimum of 2400 high-resolution screen (1920 × 1080). assessment of staining was based on a semi-quantitative approach […]

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