slideToolkit statistics

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Citations per year

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Popular tool citations

chevron_left Morphometric analysis Cell counting Cell phenotyping Data management and annotation chevron_right
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Tool usage distribution map

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Associated diseases

Associated diseases

slideToolkit specifications


Unique identifier OMICS_14869
Name slideToolkit
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Bastiaan Nelissen <>

Publication for slideToolkit

slideToolkit in publication

PMCID: 4277457
PMID: 25541691
DOI: 10.1371/journal.pone.0115907

[…] characteristics in total tissue specimen is needed. whole slide virtual imaging can be used for this purpose , . to quantify characteristics on these whole slide images, we have developed the slidetoolkit software (further annotated as method q2). this is a new method using free open-source software, targeted to overcome the aforementioned limitations. we tested the precision (not […]

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slideToolkit institution(s)
Department of Vascular Surgery, University Medical Center Utrecht, Utrecht, Netherlands; Department of Pathology, University Medical Center Utrecht, Utrecht, Netherlands; Laboratory of Experimental Cardiology, University Medical Center Utrecht, Utrecht, Netherlands

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