slideToolkit specifications


Unique identifier OMICS_14869
Name slideToolkit
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes




No version available



  • person_outline Bastiaan Nelissen

Publication for slideToolkit

slideToolkit citation


High Reproducibility of Histological Characterization by Whole Virtual Slide Quantification; An Example Using Carotid Plaque Specimens

PLoS One
PMCID: 4277457
PMID: 25541691
DOI: 10.1371/journal.pone.0115907

[…] uantify characteristics in total tissue specimen is needed. Whole slide virtual imaging can be used for this purpose , . To quantify characteristics on these whole slide images, we have developed the slideToolkit software (further annotated as method Q2). This is a new method using free open-source software, targeted to overcome the aforementioned limitations. We tested the precision (not the accu […]

slideToolkit institution(s)
Department of Vascular Surgery, University Medical Center Utrecht, Utrecht, Netherlands; Department of Pathology, University Medical Center Utrecht, Utrecht, Netherlands; Laboratory of Experimental Cardiology, University Medical Center Utrecht, Utrecht, Netherlands

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