SLIQ specifications

Information


Unique identifier OMICS_00048
Name SLIQ
Software type Application/Script, Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Rajat Roy

Publication for SLIQ

SLIQ citation

library_books

Approaches for in silico finishing of microbial genome sequences

2017
Genet Mol Biol
PMCID: 5596377
PMID: 28898352
DOI: 10.1590/1678-4685-GMB-2016-0230

[…] ication of connections between different contigs using the relative-orientation information and the estimated insert-size. ABySS (), SOPRA (), SOAPdenovo (), Bambus 2 (), MIP (), Opera (), SSPACE (), SLIQ (), SGA (), SCARPA (), WiseScaffolder () and ScaffoldScaffolder () are examples of scaffolding tools based on paired-end information. More recently, the use of long-reads was also incorporated in […]

SLIQ institution(s)
Department of Computer Science, Rutgers, The State University of New Jersey, Piscataway, NJ, USA

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