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SLoMo specifications


Unique identifier OMICS_06875
Name SLoMo
Alternative name Site Localization of Modifications
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for Site Localization of Modifications

SLoMo citations


Genetic Determinants of Crop Timing and Quality Traits in Two Interspecific Petunia Recombinant Inbred Line Populations

Sci Rep
PMCID: 5466624
PMID: 28600539
DOI: 10.1038/s41598-017-03528-9

[…] egulation and miRNA-regulated pathways. Overexpression of cytokinin oxidase in tobacco resulted in a decrease in cytokinin concentration and a decrease in development rate. Similarly, the arabidopsis slomo mutant exhibits reduced free auxin levels and a decreased development rate. Expression of the rice genes PLASTOCHRON1 and PLASTOCHRON2, encoding a cytochrome P450 and a MEI2-like RNA binding pro […]


Candidate gene selection and detailed morphological evaluations of fs8.1, a quantitative trait locus controlling tomato fruit shape

J Exp Bot
PMCID: 4588892
PMID: 26175354
DOI: 10.1093/jxb/erv361

[…] s been shown to control cytokinin level and regulate reproductive meristem, flower organ, and fruit sizes by impacting cell number in Arabidopsis (; ). Solyc08g061820 encoded a putative orthologue of SLOMO (SLOW MOTION) in Arabidopsis, which is an F-box protein involved in the maintenance of a normal plastochron by regulating auxin homeostasis (). Solyc08g062630 encoded a putative orthologue of an […]


Computational phosphoproteomics: From identification to localization

PMCID: 4384807
PMID: 25475148
DOI: 10.1002/pmic.201400372

[…] e score between the first- and second-ranked site candidates.Since then there have been several localization algorithms based or building on this general principle, summarized in Table. This includes SLoMo [], whose most important contribution to this field was that it was the first ET-compatible localizer, highlighting the utility of alternate activation methods for phosphopeptide determination.A […]


Genome wide survey and expression analysis of F box genes in chickpea

BMC Genomics
PMCID: 4340835
PMID: 25759239
DOI: 10.1186/s12864-015-1293-y

[…] omologs were found to occur in chickpea also where they may be performing similar functions. For example, close homologs of TIR1 [] (Ca_03430; 79.42% protein identity), AFB5 [] (Ca_23059; 68.13%) and SLOMO [] (Ca_09143; 63.49%) which are known to be involved in plant growth and development through auxin homeostasis could be identified in the chickpea F-box genes.An examination of the exon-intron o […]


Confident and sensitive phosphoproteomics using combinations of collision induced dissociation and electron transfer dissociation☆

J Proteomics
PMCID: 4047622
PMID: 24657495
DOI: 10.1016/j.jprot.2014.03.010
call_split See protocol

[…] data to generate a higher confidence dataset with a less than 1% FDR at the PSM level. Only top ranked hits were reported. Phosphorylation site localisation was performed using an in-house version of SLoMo , Ascore and the Mascot Delta score . To allow high-throughput analysis of the data several in-house changes were made to the original SLoMo modification site localisation tool to generate our […]


Differential Phosphoproteomics of Fibroblast Growth Factor Signaling: Identification of Src Family Kinase Mediated Phosphorylation Events

J Proteome Res
PMCID: 2950672
PMID: 20225815
DOI: 10.1021/pr9010475
call_split See protocol

[…] her Scientific Inc.). The DTA files were searched using Mascot with the search parameters as described above. Mascot search results were exported as a pepxml file and this file was analyzed using the SloMo software.() […]


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SLoMo institution(s)
School of Biosciences, University of Birmingham, Edgbaston, Birmingham, UK

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