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SLoMo specifications

Information


Unique identifier OMICS_06875
Name SLoMo
Alternative name Site Localization of Modifications
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for Site Localization of Modifications

SLoMo citations

 (7)
library_books

Genetic Determinants of Crop Timing and Quality Traits in Two Interspecific Petunia Recombinant Inbred Line Populations

2017
Sci Rep
PMCID: 5466624
PMID: 28600539
DOI: 10.1038/s41598-017-03528-9

[…] egulation and miRNA-regulated pathways. Overexpression of cytokinin oxidase in tobacco resulted in a decrease in cytokinin concentration and a decrease in development rate. Similarly, the arabidopsis slomo mutant exhibits reduced free auxin levels and a decreased development rate. Expression of the rice genes PLASTOCHRON1 and PLASTOCHRON2, encoding a cytochrome P450 and a MEI2-like RNA binding pro […]

library_books

Candidate gene selection and detailed morphological evaluations of fs8.1, a quantitative trait locus controlling tomato fruit shape

2015
J Exp Bot
PMCID: 4588892
PMID: 26175354
DOI: 10.1093/jxb/erv361

[…] s been shown to control cytokinin level and regulate reproductive meristem, flower organ, and fruit sizes by impacting cell number in Arabidopsis (; ). Solyc08g061820 encoded a putative orthologue of SLOMO (SLOW MOTION) in Arabidopsis, which is an F-box protein involved in the maintenance of a normal plastochron by regulating auxin homeostasis (). Solyc08g062630 encoded a putative orthologue of an […]

library_books

Computational phosphoproteomics: From identification to localization

2015
Proteomics
PMCID: 4384807
PMID: 25475148
DOI: 10.1002/pmic.201400372

[…] e score between the first- and second-ranked site candidates.Since then there have been several localization algorithms based or building on this general principle, summarized in Table. This includes SLoMo [], whose most important contribution to this field was that it was the first ET-compatible localizer, highlighting the utility of alternate activation methods for phosphopeptide determination.A […]

library_books

Genome wide survey and expression analysis of F box genes in chickpea

2015
BMC Genomics
PMCID: 4340835
PMID: 25759239
DOI: 10.1186/s12864-015-1293-y

[…] omologs were found to occur in chickpea also where they may be performing similar functions. For example, close homologs of TIR1 [] (Ca_03430; 79.42% protein identity), AFB5 [] (Ca_23059; 68.13%) and SLOMO [] (Ca_09143; 63.49%) which are known to be involved in plant growth and development through auxin homeostasis could be identified in the chickpea F-box genes.An examination of the exon-intron o […]

call_split

Confident and sensitive phosphoproteomics using combinations of collision induced dissociation and electron transfer dissociation☆

2014
J Proteomics
PMCID: 4047622
PMID: 24657495
DOI: 10.1016/j.jprot.2014.03.010
call_split See protocol

[…] data to generate a higher confidence dataset with a less than 1% FDR at the PSM level. Only top ranked hits were reported. Phosphorylation site localisation was performed using an in-house version of SLoMo , Ascore and the Mascot Delta score . To allow high-throughput analysis of the data several in-house changes were made to the original SLoMo modification site localisation tool to generate our […]

call_split

Differential Phosphoproteomics of Fibroblast Growth Factor Signaling: Identification of Src Family Kinase Mediated Phosphorylation Events

2010
J Proteome Res
PMCID: 2950672
PMID: 20225815
DOI: 10.1021/pr9010475
call_split See protocol

[…] her Scientific Inc.). The DTA files were searched using Mascot with the search parameters as described above. Mascot search results were exported as a pepxml file and this file was analyzed using the SloMo software.() […]

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SLoMo institution(s)
School of Biosciences, University of Birmingham, Edgbaston, Birmingham, UK

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