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SLOPE | A method for locating non-SNP structural variation from targeted NGS

Detects structural variants from targeted short-DNA reads. Both real and simulated data are used to demonstrate SLOPE's ability to rapidly detect insertion/deletion events of various sizes as well as translocations and viral integration sites with high sensitivity and low false discovery rate.

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SLOPE forum

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SLOPE classification

SLOPE specifications

Unique identifier:
OMICS_02169
Interface:
Command line interface
Input format:
SAM, FASTQ, MAQ
Programming languages:
C++
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

SLOPE distribution

versioning

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No versioning.

Credits

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Publications

Institution(s)

Department of Internal Medicine, Division of Genetic Epidemiology, Department of Pathology, University of Utah, Salt Lake City, UT, USA

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