SlopMap specifications

Information


Unique identifier OMICS_23305
Name SlopMap
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format FASTQ, FASTA, SFF, TXT
Output format FASTQ, FASTA, SFF, TXT
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainers


  • person_outline Ilya Zhbannikov
  • person_outline Samuel Hunter
  • person_outline Matthew Settles
  • person_outline James Foster

Publication for SlopMap

SlopMap citation

library_books

A new strategy to infer circularity applied to four new complete frog mitogenomes

2018
Ecol Evol
PMCID: 5916287
PMID: 29721275
DOI: 10.1002/ece3.3918

[…] g., ABySS, MaSuRCA, SOAPdenovo2, and Velvet—Luo et al., ; Simpson, Wong, Jackman, Schein, & Jones, ; Zerbino & Birney, ; Zimin et al., ), tools for identification of similar sequences (e.g., BLAT and SlopMap—Kent, ; Zhbannikov, ), and multiple sequence aligners (e.g., MUSCLE and SINA—Edgar, ; Pruesse, Peplies, & Glöckner, ), among other applications. In the context of finding circular sequences vi […]

SlopMap institution(s)
Department of Bioinformatics and Computational Biology, University of Idaho, ID, USA; The Institute of Bioinformatics and Evolutionary Studies (IBEST), University of Idaho, ID, USA
SlopMap funding source(s)
Supported by NIH Grant P20 RR16454 from the IN-BRE Program of the National Center for Research Resources.

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