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SLP-Local specifications

Information


Unique identifier OMICS_07279
Name SLP-Local
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Setsuro Matsuda <>

Publication for SLP-Local

SLP-Local in publications

 (5)
PMCID: 5499015
PMID: 28679357
DOI: 10.1186/s12864-017-3894-0

[…] infer a consensus subcellular localization for each kdac and kat ortholog. these programs included wolf psort ([]; https://wolfpsort.hgc.jp/), targetp ([]; http://www.cbs.dtu.dk/services/targetp/), slp-local ([]; http://sunflower.kuicr.kyoto-u.ac.jp/~smatsuda/slplocal.html), predsl ([]; http://aias.biol.uoa.gr/predsl/input.html) and predotar ([]; https://urgi.versailles.inra.fr/tools/predotar). […]

PMCID: 4263762
PMID: 25503798
DOI: 10.1371/journal.ppat.1004555

[…] acid metabolism (∼36%), and cell structure and organization (∼18%)., subcellular localizations of each protein were predicted () using a series of algorithms (ptarget, targetp, wolf-psort, and slp-local). both plant and non-plant-optimized predictions were performed as a means of comparison, but we report here non-plant, targeting predictions. approximately 20% of our identifications […]

PMCID: 5654406
PMID: 21444293
DOI: 10.1093/gbe/evr029

[…] (http://www.cbs.dtu.dk/services/targetp/), predotar (http://urgi.versailles.inra.fr/predotar/), mitoprot ii (http://ihg.gsf.de/ihg/mitoprot.html), protein prowler (http://pprowler.imb.uq.edu.au/), slp-local (http://sunflower.kuicr.kyoto-u.ac.jp/∼smatsuda/slplocal.html), and slpfa (http://sunflower.kuicr.kyoto-u.ac.jp/∼tamura/slpfa.html)., – and – are available at genome biology and evolution […]

PMCID: 3060929
PMID: 21437209
DOI: 10.1371/journal.pone.0018013

[…] used the following localization prediction algorithms to identify contaminant proteins from other cellular compartments: targetp 1.1 , ptarget , wolfpsort , slp-local , pa-sub . perl scripts were used to filter data with prediction confidence thresholds of 80%. final […]

PMCID: 2679645
PMID: 19440515
DOI: 10.2174/138920208784340740

[…] (le 1265/3 [afgn] and sfb tr1, tp a10)., predictions of chloroplast targeting were performed with the following algorithms: predotar [], targetp [], protein prowler [], aaindexloc [], predsl [], slp-local [], wolf psort [], multiloc [] and pclr []. several combinations were tried, in which a pk was considered to be chloroplast located when predicted by at least n (‘n of 9’) of the nine […]


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SLP-Local institution(s)
Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, Japan

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