SLP-Local statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SLP-Local
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Tool usage distribution map

This map represents all the scientific publications referring to SLP-Local per scientific context
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Protocols

SLP-Local specifications

Information


Unique identifier OMICS_07279
Name SLP-Local
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Setsuro Matsuda

Publication for SLP-Local

SLP-Local citations

 (8)
library_books

Genome scale analysis of regulatory protein acetylation enzymes from photosynthetic eukaryotes

2017
BMC Genomics
PMCID: 5499015
PMID: 28679357
DOI: 10.1186/s12864-017-3894-0

[…] o infer a consensus subcellular localization for each KDAC and KAT ortholog. These programs included WoLF pSORT ([]; https://wolfpsort.hgc.jp/), TargetP ([]; http://www.cbs.dtu.dk/services/TargetP/), SLP-Local ([]; http://sunflower.kuicr.kyoto-u.ac.jp/~smatsuda/slplocal.html), PRedSL ([]; http://aias.biol.uoa.gr/PredSL/input.html) and PREDOTAR ([]; https://urgi.versailles.inra.fr/Tools/Predotar). […]

library_books

Proteomic Analysis of the Acidocalcisome, an Organelle Conserved from Bacteria to Human Cells

2014
PLoS Pathog
PMCID: 4263762
PMID: 25503798
DOI: 10.1371/journal.ppat.1004555

[…] ch as mass spectrometry. To identify likely contaminants from non-acidocalcisomal compartments in our proteomic dataset, we used a series of subcellular prediction algorithms: TargetP 1.1 , pTARGET , SLP-LOCAL , and WoLF-PSORT . Data from each of these algorithms was processed using Perl scripts and a MySQL database to screen for proteins with prediction confidence thresholds of 80%. Final consens […]

library_books

The Costs of Scaling Up HIV Prevention for High Risk Groups: Lessons Learned from the Avahan Programme in India

2014
PLoS One
PMCID: 4159262
PMID: 25203052
DOI: 10.1371/journal.pone.0106582

[…] on platforms during Avahan partners meetings and SLP meetings to brief participants about the study methods, and receive feedback on preliminary results. Other key participants included NGO staff and SLP local partners. Extensive work was carried out to ensure the full involvement of participants in this study: and this was particularly helpful in terms of validating our results. Data were entered […]

call_split

Bioinformatic Indications That COPI and Clathrin Based Transport Systems Are Not Present in Chloroplasts: An Arabidopsis Model

2014
PLoS One
PMCID: 4138088
PMID: 25137124
DOI: 10.1371/journal.pone.0104423
call_split See protocol

[…] mnon.uni-koeln.de): BaCelLo , ChloroP_v1.1 , iPSort , Mitopred , Mitoprot_v2 , MultiLoc , PA-SUB_v2.5 , PCLR_v0.9 , PProwler_v1.1 , PrediSi , Predotar_v1 , PredSL , SignalP_HMM_v3 , , SignalP_NN_v3 , SLP-Local , TargetP_v1 , , and WoLF PSort . Using these tools, a Bayesian consensus (SigConsens) score was obtained from ARAMEMNON for each protein with patterns of interest. A score ≥10 was considere […]

library_books

New Putative Chloroplast Vesicle Transport Components and Cargo Proteins Revealed Using a Bioinformatics Approach: An Arabidopsis Model

2013
PLoS One
PMCID: 3613420
PMID: 23573218
DOI: 10.1371/journal.pone.0059898

[…] d in the ARAMEMNON: BaCelLo , ChloroP_v1.1 , iPSort , Mitopred , Mitoprot_v2 , MultiLoc , PA-SUB_v2.5 , PCLR_v0.9 , PProwler_v1.1 , PrediSi , Predotar_v1 , PredSL , SignalP_HMM_v3 , , SignalP_NN_v3 , SLP-Local , TargetP_v1 , and WoLF PSort . Using these tools, a Bayesian consensus (SigConsens) score was obtained from ARAMEMNON for each protein with patterns of interest . A score ≥10 was considere […]

call_split

Histone acetyltransferases in rice (Oryza sativa L.): phylogenetic analysis, subcellular localization and expression

2012
BMC Plant Biol
PMCID: 3502346
PMID: 22894565
DOI: 10.1186/1471-2229-12-145
call_split See protocol

[…] SLP-Local ( http://sunflower.kuicr.kyoto-u.ac.jp/~smatsuda/slplocal.html) is a subcellular location predictor based on local features of amino acid sequences [,]. TargetP version 1.1 ( http://www.cbs. […]


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SLP-Local institution(s)
Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, Japan

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