SLqPCR statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Data analysis chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

SLqPCR specifications

Information


Unique identifier OMICS_04010
Name SLqPCR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.46.0
Stability Stable
Requirements
stats, RColorBrewer, R(>=2.4.0)
Maintained Yes

Versioning


Add your version

Documentation


SLqPCR in publications

 (21)
PMCID: 5411030
PMID: 28459824
DOI: 10.1371/journal.pone.0176402

[…] were 39 and 23°c, respectively. animals were housed in the animal science department at universidade estadual do sudoeste da bahia. we analyzed the expression data by four statistical tools (slqpcr, normfinder, bestkeeper and comparative ct). according to these tools, genes stability varied according to sex, genetic group and environment, however, some genes remained stable […]

PMCID: 5251938
PMID: 28133578
DOI: 10.7717/peerj.2909

[…] from the average of three technical replicates., data from rt-qpcr was then analyzed using three algorithms to calculate the most stable or best suited reference gene; normfinder (), genorm with slqpcr r-based package () bestkeeper () and reffinder (deltact method, (; ) software). all data was analyzed according to the program instructions., the geometric mean was calculated […]

PMCID: 5004159
PMID: 27571936
DOI: 10.1038/srep32299

[…] method (2–δδct) or genorm analysis., the genorm analysis was performed with the statistical software program r (version 3.0.2, r development core team, 2011) with bioconductor packages (normqpcr and slqpcr, http://www.bioconductor.org/packages/release/bioc/html/(normqpcr.html and slqpcr.html)). regarding each reference mirna, the mirna level stability measure (m) was defined as the average […]

PMCID: 4933361
PMID: 27379522
DOI: 10.1371/journal.pone.0157997

[…] machine using cycling conditions recommended by the manufacturer., the raw pcr cycle (ct) values were imported into the r statistical environment []. raw pcr cycles were normalized (dct) using the slqpcr package [] to optimize selection of house-keeping genes., for comparison of e2 treated samples to respective vehicle controls and comparison of normalized e2-treated 2d and 3d samples, dct […]

PMCID: 4673830
PMID: 26654363
DOI: 10.1186/s13104-015-1628-4

[…] genes with a pairwise variation <0.15 results in valid normalisation [, , , , ]. genorm analysis was performed using r (version 2.12.0, free software foundation) [] and the genorm method from the slqpcr package []., normfinder analysis is a model-based approach, which calculates the overall variation in expression within sample groups of interest (intragroup variation) and the variation […]


To access a full list of publications, you will need to upgrade to our premium service.

SLqPCR reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SLqPCR