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Small RNA sequencing data analysis bioinformatics software tools

Qualitative and quantitative analysis of small non-coding RNAs by next generation sequencing (smallRNA-Seq) represents a novel technology increasingly used to investigate with high sensitivity and specificity RNA population comprising microRNAs and other regulatory small…

sRNA-seq analysis steps

sRNA-seq analysis workflow

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sRNA-seq analysis workflow schema

Experts in sRNA-seq analysis

They share and annotate bioinformatics tools

  • Abdoulaye Baniré Diallo's avatar image
    Abdoulaye Baniré Diallo
    Department of Computer Sciences, University of Quebec in Montreal, Montreal, Canada

Most recent bioinformatics tools

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CoLIde
Desktop

CoLIde Co-expression based sRNA Loci Identification

Determines sRNA loci. CoLIde integrates dynamic sRNA expression levels and size…

Determines sRNA loci. CoLIde integrates dynamic sRNA expression levels and size class with genomic location to assist in finding distinct loci. It was applied to a total of four plant data sets on…

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ncRNAclassifier
Desktop

ncRNAclassifier

Offers a method for organizing precursor non-coding RNA (ncRNA) sequences…

Offers a method for organizing precursor non-coding RNA (ncRNA) sequences according to their similarity with transposable elements (TE) sequences. ncRNAclassifier provides a graphical interface for…

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SSOMncRNA
Desktop

SSOMncRNA

Provides a method for determining non-coding RNAs (ncRNAs). SSOMncRNA is a…

Provides a method for determining non-coding RNAs (ncRNAs). SSOMncRNA is a standalone software which is composed of two layers: (i) a Self-Organizing Map (SOM) stands for the hidden layer; it…

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pRuNA
Web

pRuNA

Identifies all potential regulatory ncRNAs that can establish stable joint…

Identifies all potential regulatory ncRNAs that can establish stable joint structures with a query mRNA. pRuNA provides a sequence filter which eliminates a significant fraction of the available…

Most popular analytical software

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Bowtie
Desktop

Bowtie

A short read aligner that aligns short DNA sequences (reads) to the human…

A short read aligner that aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its…

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omiRas
Web

omiRas

A Web service for the analysis of ncRNA datasets derived from Illumina sRNA-Seq…

A Web service for the analysis of ncRNA datasets derived from Illumina sRNA-Seq experiments. Starting with raw sequencing data, omiRas offers an efficient way to analyze differential expression of…

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