Small RNA sequencing data analysis software tools

Qualitative and quantitative analysis of small non-coding RNAs by next generation sequencing (smallRNA-Seq) represents a novel technology increasingly used to investigate with high sensitivity and specificity RNA population comprising microRNAs and other regulatory small transcripts. Source text: Giurato et al., 2013.

Protein interactions

Data preprocessing

Data processing

Quantification

Data analysis

Genome variant analysis

Annotation

Variant effect analysis

Genome-wide association study/Linkage/QTL

Data visualization

Classification/Clustering

Network analysis

Enrichment analysis

Workflows

File manipulation

Utilities

Unclassified tools