Small RNA sequencing data analysis bioinformatics software tools

sRNA-seq analysis steps

sRNA-seq analysis workflow

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sRNA-seq analysis workflow schema
Qualitative and quantitative analysis of small non-coding RNAs by next generation sequencing (smallRNA-Seq) represents a novel technology increasingly used to investigate with high sensitivity and specificity RNA population comprising microRNAs and…

Small RNA sequencing data analysis bioinformatics software tools

Most Recent Tools

Web app
G T A T C G C T A mirDBA mirDBA

mirDBA

Predicts novel miRNA candidates. mirDBA is based on alignment of read profiles…

Predicts novel miRNA candidates. mirDBA is based on alignment of read profiles generated from short RNA-seq data. It aligns ncRNA read profiles from ENCODE against the miRBase read profiles (cleaned…

Desktop app
G T A T C G C T A integrative Small RNA… integrative Small RNA Tool-kit

iSmaRT integrative Small RNA Tool-kit

Analyzes smallRNA-Seq data. iSmaRT is a collection of bioinformatics tools and…

Analyzes smallRNA-Seq data. iSmaRT is a collection of bioinformatics tools and own algorithms, interconnected through a Graphical User Interface (GUI). It implements specific computational modules to…

Desktop app
G T A T C G C T A Short interfering RNA… Short interfering RNA Locus Comparison

SiLoCo Short interfering RNA Locus Comparison

Identifies sRNA loci on plant genomes from two sRNA datasets, which can be…

Identifies sRNA loci on plant genomes from two sRNA datasets, which can be uploaded by the user or selected from publicly available datasets. SiLoCo maps sRNA sequences to the genome using PatMaN and…

Web app
G T A T C G C T A LimiTT LimiTT

LimiTT

A web-based pipeline which can automatically identify and link validated miRNA…

A web-based pipeline which can automatically identify and link validated miRNA target interactions (MTIs) from extensive lists of miRNAs and target genes in batch mode, even if the provided data is…

Most Popular Tools

Web app
G T A T C G C T A omiRas omiRas

omiRas

A Web service for the analysis of ncRNA datasets derived from Illumina sRNA-Seq…

A Web service for the analysis of ncRNA datasets derived from Illumina sRNA-Seq experiments. Starting with raw sequencing data, omiRas offers an efficient way to analyze differential expression of…

Curators for sRNA-seq analysis

  • Abdoulaye Baniré Diallo's avatar image
    Abdoulaye Baniré Diallo
    Department of Computer Sciences,…

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