Small RNA sequencing data analysis bioinformatics software tools

Qualitative and quantitative analysis of small non-coding RNAs by next generation sequencing (smallRNA-Seq) represents a novel technology increasingly used to investigate with high sensitivity and specificity RNA population comprising microRNAs and other regulatory small…

sRNA-seq analysis steps

sRNA-seq analysis workflow

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sRNA-seq analysis workflow schema

Most recent bioinformatics tools

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Find-miRNA
Desktop

Find-miRNA

Finds pre-miRNAs in a RNA sequence and miRNA in each found pre-miRNA. FindMiRNA…

Finds pre-miRNAs in a RNA sequence and miRNA in each found pre-miRNA. FindMiRNA analyzes the users sequences with the sliding window of 100nt. It then uses another program to calculate the optimal…

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isomiR2Function
Desktop

isomiR2Function

Identifies templated and non-templated 5’-isomiRs and 3’-isomiRs.…

Identifies templated and non-templated 5’-isomiRs and 3’-isomiRs. isomiR2Function allows the expression quantification using empirical bayes hierarchal model (EBSeq) and/or negative binomial…

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viRome
Desktop

viRome

Separates visualization from alignment. viRome is an R package that analyses…

Separates visualization from alignment. viRome is an R package that analyses short-read next-generation sequencing (NGS) data from virus-infection studies where the siRNA or piRNA pathways have been…

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RNA workbench
Server

RNA workbench

Establishes a central, redistributable workbench for scientists and programmers…

Establishes a central, redistributable workbench for scientists and programmers working with RNA-related data. The RNA workbench builds a sustainable community around it. This platform is unique in…

Most popular analytical software

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Bowtie
Desktop

Bowtie

A short read aligner that aligns short DNA sequences (reads) to the human…

A short read aligner that aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its…

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omiRas
Web

omiRas

A Web service for the analysis of ncRNA datasets derived from Illumina sRNA-Seq…

A Web service for the analysis of ncRNA datasets derived from Illumina sRNA-Seq experiments. Starting with raw sequencing data, omiRas offers an efficient way to analyze differential expression of…

Curators for sRNA-seq analysis

  • Abdoulaye Baniré Diallo's avatar image
    Abdoulaye Baniré Diallo
    Department of Computer Sciences,…

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