SMAP specifications

Information


Unique identifier OMICS_02068
Name SMAP
Alternative name A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.44.0
Stability Stable
Requirements
methods, R(>=2.10)
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Robin Andersson

SMAP citation

library_books

CINdex: A Bioconductor Package for Analysis of Chromosome Instability in DNA Copy Number Data

2017
Cancer Inform
PMCID: 5761903
PMID: 29343938
DOI: 10.1177/1176935117746637

[…] open-source, open-development repository of software packages built using the R programming language. Bioconductor has several copy number segmentation algorithms including copynumber, fastseg, Vega, SMAP, and biomvRCNS. There are several copy number segmentation algorithms outside of Bioconductor, including Fused Margin Regression (FMR) and CBS.One of the challenges with segmentation algorithms i […]

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