SMARTIV statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left RBP motif enrichment chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

SMARTIV specifications

Information


Unique identifier OMICS_29670
Name SMARTIV
Interface Web user interface
Restrictions to use None
Input data Some RBPs from CLIP experiment.
Input format BED,FASTA
Output data The most significant combined sequence and structure motifs in a graphical presentation together with their corresponding P-values.
Output format JPG,PDF,TXT
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Yael Mandel-Gutfreund <>
  • person_outline Maya Polishchuk <>

Additional information


http://nesher.bi.technion.ac.il/SMARTIV/manual.html http://nesher.bi.technion.ac.il/SMARTIV/overview.html

Publication for SMARTIV

SMARTIV in publications

 (5)
PMCID: 5003165
PMID: 27602308
DOI: 10.1109/JTEHM.2016.2593920

[…] , diagnostic biochips has demonstrated the continuous monitoring of the chemotherapeutic agent doxorubicin in whole blood. the electrochemical sensors are embedded in a standard iv catheter, or the “smartiv™” platform. doxorubicin is an anthracycline antitumor antibiotic that has a narrow therapeutic range, bounded by cardiotoxic effects at high cumulative doses and poor efficacy at low doses. […]

PMCID: 4204807
PMID: 25333281
DOI: 10.1371/journal.pone.0062079

[…] to be of good quality., rt-pcr was carried out with 0.05–3 µg of total rna, using either superscript iii (invitrogen) or powerscript reverse transcriptase (clontech) in conjunction with spancrt or smartiv and cdiii (clontech) oligonucleotides (). all rt-pcr procedures were carried out in accordance with manufacturers' protocols. both the 5′ and 3′ oligonucleotides used in reverse transcription […]

PMCID: 3209450
PMID: 21985325
DOI: 10.1186/1471-2229-11-135

[…] modified oligo-dt (to make compatible with 454 gs flx) and 5' race primers. the primer sequences are: cdsiii-first 454: 5' tag aga ccg agg cgg ccg aca tgt ttt gtt ttt ttt tct ttt ttt ttt vn 3' and smartiv: 5' aag cag tgg tat caa cgc aga gtg gcc att acg gcc ggg 3'., for normalization, 300 nanograms (ng) of cdna was denatured and allowed to self-anneal in a 1 × hybridization buffer (50 mm hepes, […]

PMCID: 3144915
PMID: 21818341
DOI: 10.1371/journal.pone.0022573

[…] primer: 5′-att cta gag gcc gag gcg gcc gac atg t(4)gt ct(4)g ttc tgt(3) ct(4)v n-3′. the first strand was synthesized by combining 3 ul of rna, (>200 ng), 1 ul modified 3′ rt primer and 1 ul smartiv oligo (invitrogen). tubes were incubated at 72°c for 2 min, cooled to room temperature for 2 min and then combined with 2 ul of 10× first strand buffer, 1 ul of dtt, 1 µl of dntp mix, 1 ul […]

PMCID: 1790711
PMID: 17204158
DOI: 10.1186/1471-2164-8-6

[…] (clontech). this kit provided a method for producing high-quality, full-length cdna libraries from nanogram quantities of polya+ or total rna. it utilizes a specially designed oligonucleotide named smartiv™ in the first-strand synthesis to generate high yields of full-length, double-stranded cdna. æ. ægypti sg polya+ rna (300 ng) was used for reverse transcription to cdna using powerscript […]


To access a full list of publications, you will need to upgrade to our premium service.

SMARTIV institution(s)
Department of Biology, Technion-Israel Institute of Technology, Haifa, Israel; Vavilov Institute of General Genetics, Russian Academy of Science, Moscow, Russia; School of Computer Science, Herzliya Interdisciplinary Center, Herzliya, Israel; Department of Computer Science, Technion-Israel Institute of Technology, Haifa, Israel
SMARTIV funding source(s)
Supported by Lady Davis Foundation (in part).

SMARTIV reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SMARTIV