SMIDGen specifications

Information


Unique identifier OMICS_08824
Name SMIDGen
Alternative name Super-Method Input Data Generator
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for Super-Method Input Data Generator

SMIDGen citation

call_split

FastRFS: fast and accurate Robinson Foulds Supertrees using constrained exact optimization

2016
Bioinformatics
PMCID: 5870905
PMID: 27663499
DOI: 10.1093/bioinformatics/btw600
call_split See protocol

[…] ave been used in other studies () to evaluate supertree methods, all of which are available online at http://www.cs.utexas.edu/users/phylo/datasets/supertrees.html.The simulated data, referred to as ‘SMIDgen’ in , are generated using a taxon sampling strategy that mimics biological practice. These datasets have 100, 500, or 1000 taxa, with up to 25 source trees per replicate. Each supertree input […]

SMIDGen institution(s)
Department of Computer Sciences, The University of Texas at Austin, Austin TX, USA; Microsoft, Redmond WA, USA; Section of Integrative Biology, The University of Texas at Austin, Austin TX, USA
SMIDGen funding source(s)
This research was supported in part by the US National Science Foundation under grants DEB 0733029, 0331453 (CIPRES), 0121680, and DGE 0114387.

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