SMRT-Analysis protocols

SMRT-Analysis specifications

Information


Unique identifier OMICS_05142
Name SMRT-Analysis
Alternative names smrtanalysis, SMRT Analysis, SMRT
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Biological technology Pacific Biosciences
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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SMRT-Analysis IN pipelines

 (2)
2018
PMCID: 5959919
PMID: 29777105
DOI: 10.1038/s41467-018-04256-y

[…] in supplementary fig. 13. pacbio sequencing data for the two parental haploid wild-type strains were filtered and sub-reads were generated (supplementary fig. 13 and supplementary data 3) using smrt analysis v.2.3.0 (pacific biosciences) and smrtpipe.py (v1.87.139483) with the default parameters. de novo assembly was conducted using sprai53 (v.0.9.9.14) with the default parameters. newly […]

2014
PMCID: 4007992
PMID: 24786957
DOI: 10.1128/genomeA.00404-14

[…] 5,458 kb average length for wslc 1001, 43,186 reads with 5,059 bp average length for wslc 1042, and 48,172 reads with 5,466 bp average length for wslc 3009. the genomes were assembled de novo using smrt analysis 2.1.1, to 2,951,235 bp (wslc 1001), 2,942,168 bp (wslc 1042), and 2,919,538 bp (wslc 3009), with 155-, 178-, and 280-fold average coverages, respectively. the genomes were annotated […]

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