SMRT-SV statistics

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SMRT-SV specifications


Unique identifier OMICS_19915
Alternative name SMRT-WGS
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, Perl, Python
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Evan Eichler <>

Publication for SMRT-SV

SMRT-SV in publications

PMCID: 5829575
PMID: 29272440
DOI: 10.1093/nar/gkx1266

[…] in combination with short reads (), to investigate structural variation. the present tools for structural variant calling solely from long read data focus on insertions, deletions, and inversions (smrt-sv ()) and additionally translocations (multibreaks-sv () and pbhoney ())., in this study, we describe a method for finding arbitrarily-complex ‘local’ rearrangements, i.e. intrachromosomal […]

PMCID: 5870608
PMID: 28881988
DOI: 10.1093/bioinformatics/btx254

[…] experiments. first, we applied pamir on a high coverage wgs dataset generated from a single haploid sample (chm1) () and compared our results with novel insertions found in the same genome with the smrt-sv algorithm that uses long read, i.e. pacific biosciences, sequencing technology. finally, we evaluated pamir ’s performance in multi-sample insertion discovery and genotyping using 10 […]

PMCID: 4988886
PMID: 27487209
DOI: 10.1038/nature19075

[…] as well as the simons vip consortium. approved researchers can obtain the simons vip dataset, the ssc dataset, and/or biospecimens by applying at we thank m. chaisson for smrt wgs data, b. vernot for archaic introgression data, b.j. nelson and k. munson for technical assistance, m.l. gage for editorial comments, and t. brown for assistance with manuscript preparation. […]

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SMRT-SV institution(s)
Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA; Dipartimento di Biologia, Universita degli Studi di Bari “Aldo Moro”, Bari, Italy; Department of Pathology, University of Pittsburgh, Pittsburgh, PA, USA; Pacific Biosciences of California, Inc., Menlo Park, CA, USA
SMRT-SV funding source(s)
Supported, in part, by U.S. National Institutes of Health (NIH) grant HG002385, the U.S. National Institute of Neurological Disorders and Stroke (award K99NS083627) and by the Howard Hughes Medical Institute.

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